PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS782740.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 148aa    MW: 17116.1 Da    PI: 7.6338
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS782740.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.6e-0988108526
                   --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    C++f++ G Ck Gd+C FaHg
  EcS782740.10  88 ACPDFRK-GACKKGDSCEFAHG 108
                   7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.0E-582112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.92983110IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-583109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-687110IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-788108IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4115146IPR000571Zinc finger, CCCH-type
SMARTSM0035616118141IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
GGGECCNDLT ALRRFLPSNH HQDEEDEEDG RAPGEDGVLG CDEFRMYEFK VRKCARGRSH  60
DWTECPYAHP GEKARRRDPR RFFYSGTACP DFRKGACKKG DSCEFAHGVF ECWLHPERYR  120
TQACKDGHSC RRRVCFFAHS PDQLRVLP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049147.11e-105PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 2
SwissprotO821992e-71C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A059CUK71e-100A0A059CUK7_EUCGR; Uncharacterized protein
STRINGXP_010049147.11e-104(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.17e-74C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]