PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS785264.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 257aa    MW: 29502.3 Da    PI: 6.8964
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS785264.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.52.9e-19153247198
                   EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                   ffkv +++++ +++ + +p +fa++h +++ ++++tl+    s rsW+vkl+   +  ++++++GW  F+++ +L++g ++vF+l++r++  ++v++
  EcS785264.10 153 FFKVVIRPSYIEHHVVHVPSQFARQHiQEN-KKERTLR---YSDRSWSVKLSRYTREIQVFFSAGWPAFARETHLCVGNVCVFELIDRDDVVFKVSI 245
                   99************************6333.3434555...577*******55555555***************************99999899999 PP

                   E- CS
            B3  97 fr 98 
                   f+
  EcS785264.10 246 FS 247
                   97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.377150IPR003340B3 DNA binding domain
SuperFamilySSF1019367.85E-11757IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-12761IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-21146248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-19147248IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-16153248IPR003340B3 DNA binding domain
SMARTSM010191.2E-11153249IPR003340B3 DNA binding domain
CDDcd100171.74E-15153247No hitNo description
PROSITE profilePS5086313.042153249IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGVEKLNNST VWLWKGWQEF MRHYSIGHGH LVVFKYKGNS TFRVMIFDKS ASEIDYSLSS  60
ISNLGSGFIL PKREDVIEVE DSEDFAPCQK KRVDPHSPCS QPSPSCSSPD LEEGIGQSRC  120
RASHPEPNFG GPMSSWPLRS FELACEFDSE YPFFKVVIRP SYIEHHVVHV PSQFARQHIQ  180
ENKKERTLRY SDRSWSVKLS RYTREIQVFF SAGWPAFARE THLCVGNVCV FELIDRDDVV  240
FKVSIFSSGG KDQIHID
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065661.11e-136PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_010065663.11e-137PREDICTED: B3 domain-containing transcription factor VRN1 isoform X4
TrEMBLA0A059BB471e-137A0A059BB47_EUCGR; Uncharacterized protein
STRINGXP_010065661.11e-136(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-14B3 family protein