PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS785391.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Whirly
Protein Properties Length: 100aa    MW: 11216.7 Da    PI: 8.509
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS785391.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly81.51.2e-2516078137
        Whirly  78 hdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                   hdp++ +sn+G+vrk+l+++P++dG G+f++lsv+n+++k+ne+f+vPv+ aefav++++
  EcS785391.10   1 HDPSMLSSNAGQVRKSLSIKPHADGGGYFISLSVNNNILKTNERFTVPVTAAEFAVMKTA 60 
                   9*********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.4E-31182IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544473.37E-30198IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.7E-21159IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
HDPSMLSSNA GQVRKSLSIK PHADGGGYFI SLSVNNNILK TNERFTVPVT AAEFAVMKTA  60
CSFALPHIMG WDRYTNNQRH RAEESPSKVD KQILDLEWDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A2e-4317693168StWhy2
3n1i_A2e-4317693168protein StWhy2
3n1j_A2e-4317693168Protein StWhy2
3n1k_A2e-4317693168protein StWhy2
3n1l_A2e-4317693168protein StWhy2
3r9y_A2e-4317693168Why2 protein
3r9z_A2e-4317693168Why2 protein
3ra0_A2e-4317693168Why2 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035836.12e-68PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial
SwissprotD9J0345e-50WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A059A1U89e-68A0A059A1U8_EUCGR; Uncharacterized protein
STRINGXP_010035836.18e-68(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-45WHIRLY 2