PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS785456.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Dof

Protein Properties

Length: 128aa MW: 14276 Da PI: 9.8862

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS785456.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.2e-39	17	76	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ l cprCdstntkfCy+nny+lsqPr+fCk+C+ryWtkGG+lrn+PvGgg+rk+ +++ EcS785456.10 17 QERLICPRCDSTNTKFCYFNNYNLSQPRHFCKNCKRYWTKGGSLRNIPVGGGTRKKSSTK 76 67889**************************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	14	71	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.0E-33	19	74	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.761	20	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	22	58	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MQETTAFQST KLLFPEQERL ICPRCDSTNT KFCYFNNYNL SQPRHFCKNC KRYWTKGGSL 60 RNIPVGGGTR KKSSTKRASN PKRQNPDPDP DPRPSKHGLQ LQESATADSL QSNATEGALL 120 EGPNSSGL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010062587.1	7e-91	PREDICTED: dof zinc finger protein DOF3.1
Swissprot	O82155	3e-37	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A059BUT8	2e-90	A0A059BUT8_EUCGR; Uncharacterized protein
STRING	XP_010062587.1	3e-90	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-39	DOF zinc finger protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]