PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EuGene.0400010508
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 547aa    MW: 58240.7 Da    PI: 6.8953
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EuGene.0400010508genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41.1e-07235255526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         C+ f++ G C++Gd C +aHg
  EuGene.0400010508 235 ACPEFRK-GSCPRGDVCEYAHG 255
                        7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.204.0E-176126IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.18E-156127IPR020683Ankyrin repeat-containing domain
CDDcd002042.78E-156129No hitNo description
SMARTSM002480.00185180IPR002110Ankyrin repeat
PROSITE profilePS5029716.6851126IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.2055183IPR002110Ankyrin repeat
PfamPF136375.4E-552109No hitNo description
SMARTSM002482.486118IPR002110Ankyrin repeat
PROSITE profilePS500888.7986121IPR002110Ankyrin repeat
SMARTSM003564.6E-6230256IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.887230257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-5234257IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-5235255IPR000571Zinc finger, CCCH-type
SMARTSM0035627265288IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.014265289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MSLSTSPVLA AAASNDLAQV RWLLERENVP VDFMGDWYAE PRNGGKGLER QRRTPCMVAA  60
SHGSLEVLLY VLQMGADPNL RSEDEDRCTA MHCAAAGGAA LSTDAIKTLL LFGADRNARD  120
TYGRVPADCL PGTTSEVTMN GSDGGGSSSG VSGVSMGGNG RGHGQGSGAA VNSQGGMLQD  180
PDPETLMSDE FRMYEFKIRR CSRTRAHDWT ECPYTHPGEK ARRRDPRRFN YSGTACPEFR  240
KGSCPRGDVC EYAHGVFECW LHPSRYRTQL CKDGAACDRR ACFFAHHTSQ LRVPTDAFGN  300
GLCGKVSPDT PSPTGSGSPQ NGSPRQSSAS LDWSVTRSSE SDSTHSMAAA MLRANPLLGA  360
GGAAAFDVGG AQGMAFPPLP MLQSQYSQQL QGLSQQGSSQ IPQQSQSPPP QQVNQNAQMM  420
ANYVSSMANM QGMNGADIQG NMFSLGYNSM FNQPDASFQG QHQMMQQTAM MDGNSAAGGG  480
MGPKAQSSGS GGSTVSDQKG LHPGAKLFTL PAHNLQTQHL RRNSSSFQHL GMIEGVLDGD  540
ELRQEK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14152RNGGKGLERQRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001417127.10.0predicted protein
TrEMBLA4RVF70.0A4RVF7_OSTLU; Uncharacterized protein
STRINGABO954200.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-68C3H family protein