PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EuGene.0600010336
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 199aa    MW: 21420.1 Da    PI: 10.364
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EuGene.0600010336genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-084189346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                        W++ E   l+ +v+++G g+W++I r          R+  ++k++w++
  EuGene.0600010336 41 TWSEAETRALAAGVAEHGVGQWAKIKRDAKyastlSMRSNVDLKDKWRT 89
                       6*********************************999**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.0853491IPR017877Myb-like domain
SuperFamilySSF466898.58E-123690IPR009057Homeodomain-like
SMARTSM007179.7E-43893IPR001005SANT/Myb domain
CDDcd116603.16E-174089No hitNo description
PfamPF002496.1E-74189IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-104189IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAKKTVKAGM NTSRDGLVDM GTVPGTVKTL NRKKSRKLYR TWSEAETRAL AAGVAEHGVG  60
QWAKIKRDAK YASTLSMRSN VDLKDKWRTA KTGPSPRKPR SPSLGRGPVS PVGASSPTAA  120
ARAAEYSRLS PTAKQVLNEL RASGQVPAHA EHLSPSPIRM SVPNAAEYDD DEGFEDYRYG  180
SPEPTTDAVD DRSNCSMM*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3956912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-13MYB_related family protein