PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EuGene.0900010501
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family CO-like
Protein Properties Length: 407aa    MW: 44649 Da    PI: 6.2946
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EuGene.0900010501genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.98.4e-08246442
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42
                       ++C+ +    +  fCe ++++lC+ C    H g       H++v++
  EuGene.0900010501  2 PTCAVCRARDAVVFCEADEVFLCDGCDAVVH-GanevaakHKRVSV 46
                       79******99*********************.55899999999875 PP
2CCT51.24.6e-18241286144
                CCT   1 ReaallRYkeKrktRkF..eKkirYesRKavAesRpRvKGrFvkqa 44 
                        R+a+l RY+ Kr++R+    K +rYe+RK++A+ R RvKGrFvk++
  EuGene.0900010501 241 RQAQLDRYRAKRERRLLglHKVTRYECRKTLADARVRVKGRFVKAS 286
                        99*************96337***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.31146IPR000315B-box-type zinc finger
SMARTSM003363.6E-9146IPR000315B-box-type zinc finger
PfamPF006431.2E-5245IPR000315B-box-type zinc finger
CDDcd000211.67E-5446No hitNo description
PROSITE profilePS5101710.566241285IPR010402CCT domain
PfamPF062035.8E-16241285IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MPTCAVCRAR DAVVFCEADE VFLCDGCDAV VHGANEVAAK HKRVSVEHWY TETMARRLSG  60
HQDALPDHRC HEMSHQTSEI SAKDTQQCSD SSVGTNGKRQ DAGMFFNLDE IDHSPQLERQ  120
PRFSGTSETV KFDMDTGYDD PLESILNLTA DESALLLNEA GASISAALDA VVNEIQSDNT  180
AAKAYANVCA REKFEPKPSP LGLGMPAMQY DASLWPPQLP KVTIPGDFFY NAPKRLVSKE  240
RQAQLDRYRA KRERRLLGLH KVTRYECRKT LADARVRVKG RFVKASAEGK AVEAMKSIQS  300
CPDLSALVEG SDGSKAKFIP SSDDSVIYAN KDSSKRRISD DTTSSSDTSQ GESLDFKKLQ  360
QLGDDGEPST ASGLDSHSTV SALRRTKKKQ MRHCDSEICL TDLVGM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001419738.11e-103predicted protein
TrEMBLA4S2F21e-101A4S2F2_OSTLU; Uncharacterized protein
STRINGABO980311e-102(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP741055
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.12e-15CONSTANS-like 2