PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EuGene.1100010359
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family WRKY
Protein Properties Length: 620aa    MW: 69607.3 Da    PI: 10.6153
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EuGene.1100010359genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.22.9e-22187225240
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkver 40 
                         Dgy+WrKYGqK++kgs++prsYYrCt +gCp++kk e 
  EuGene.1100010359 187 ADGYRWRKYGQKNIKGSRHPRSYYRCTERGCPARKKTEL 225
                        6**********************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.036181224IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.0E-22185267IPR003657WRKY domain
SuperFamilySSF1182902.88E-18185267IPR003657WRKY domain
SMARTSM007741.7E-27186266IPR003657WRKY domain
PfamPF031065.6E-23188265IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MDRSTRRDSR NTPRRRPTTA RDRPTDRPIA RGLGLVCVCA VSTARARARR RGLDDEDSTT  60
REREREREEG RKRDPSRVSP SIVSIGLRAT RTRHTSEGVI HPSSDPRERE TRVDWKSVDE  120
KEKGGRSIER RRGEERRGIM TPRRRDRAET MDTNETNETT HTTYAMMTEE GGWSTPRAAR  180
CGAVANADGY RWRKYGQKNI KGSRHPRSYY RCTERGCPAR KKTELVDGAR NETASRGVAE  240
KGDDGTTGPK TPVLRVTYEG EHTHEKPTEV KANGTTTTTT TTTTMMTTIP VIVTPEKRGR  300
ERESDFGMDG GLSRSFVDEE GDEEERRGKT PTRRKRAKID DGGEETRTPT KKIVATVESR  360
SSATKPKRAT PPSRRRRGPE RERRESSCSA AKATSDVGRD ARRAPTSPVA RDIFSCFDDY  420
VDRTRAWERQ RELRYDFDPL AALDERARRE FYDGMLTKVP DDDARRRRLS TARSLAAFDV  480
APSPTWPFGE IDLETRLREL TEDASAERLP MSPPPPVSRD ADAHRGRRER RPPALCVSRD  540
AAVASTGFTS PRASESWFGG YLRSPSIIDS IVAGSPLLAS FTRNVRSWCE SPSFAALSPL  600
PRGVLDGFAR PSTEASGHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-131882671674WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4691626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.12e-15WRKY DNA-binding protein 32