PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EuGene.1300010252
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 199aa    MW: 21948.2 Da    PI: 5.8503
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EuGene.1300010252genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.55.5e-12756347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                       +WTteE+  l ++vk++G+g W+ I +          R+  ++k++w+++
  EuGene.1300010252  7 KWTTEEENALREGVKKYGPGKWRMIQKDAVlsrilHLRSNVDLKDKWRNL 56
                       8**********************************88***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.254161IPR017930Myb domain
SMARTSM007172.4E-7459IPR001005SANT/Myb domain
SuperFamilySSF466892.3E-15459IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-14560IPR009057Homeodomain-like
PfamPF002492.6E-9756IPR001005SANT/Myb domain
CDDcd116601.03E-18756No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000785Cellular Componentchromatin
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MANPKYKWTT EEENALREGV KKYGPGKWRM IQKDAVLSRI LHLRSNVDLK DKWRNLHSNG  60
YDRAASPALK DDKRSAPSTS APSQTQGAQA GAKKRKTDDE RATGSGEVGA NKAFDVATNE  120
LFNETQRAKR EAKNAQDAVE RAEAVAAQAE REAWEAEKLS RELITESHRQ KFGIPVEGTE  180
DVAEVAAALL DETPDEET*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001420911.11e-50predicted protein
TrEMBLA4S6A72e-49A4S6A7_OSTLU; Uncharacterized protein
STRINGABO992044e-50(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3956912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-21telomere repeat binding factor 1