PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EuGene.2000010207
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family Nin-like
Protein Properties Length: 201aa    MW: 22953.1 Da    PI: 9.4955
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EuGene.2000010207genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK43.85.2e-143883550
             RWP-RK  5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50
                         le+l +  slp + AA+++gv+ T+ K + R++G++RWP+Rk +
  EuGene.2000010207 38 FGLEELFARVSLPATLAARSMGVSETTFKLRTRELGVHRWPYRKFQ 83
                       5688999999**********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151912.62811105IPR003035RWP-RK domain
PfamPF020421.8E-124085IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGTDGSGSSA SAFSNASRAR HPSSTTVPTH HRAHGREFGL EELFARVSLP ATLAARSMGV  60
SETTFKLRTR ELGVHRWPYR KFQAVVVCYE YVSRVFKDLV DEFSAKLGHM DEEQRRLFAR  120
ENNSMFLRMK VASEELTQDL ETIEAFAEHM RERFLRLGCV CDDCDASEAA QNFHKLRRKV  180
YKHRSMLATY TKNIIKNTLQ *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1331433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.12e-06RWP-RK domain-containing protein