PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.A00102.1.p

Common Name

EUGRSUZ_A00102, LOC104435578

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bZIP

Protein Properties

Length: 420aa MW: 45742.7 Da PI: 6.4604

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.A00102.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.3	2.2e-10	224	282	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l++e+ Eucgr.A00102.1.p 224 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLTLLQRDTNGLTAEN 282 9*********************************************9998888777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-15	220	284	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.898	222	285	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.85E-11	224	275	No hit	No description
Pfam	PF00170	5.9E-9	224	278	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.8E-10	224	278	No hit	No description
CDD	cd14703	1.62E-25	225	274	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MDKDKLTGHS SGLPPPPSGR FAGFSPNANA FSVKPEQPSA AASSSSFLPM AQGQNLVSDF 60 SHDISRMPDN PPRNRGHRRA HSEILTLPDD ISFDSDLGVV GAADGPSFSD DTEEDLFSMY 120 LDMDKFNSSS ATSSFQMGEP SSAPMAMPGA GDSGSGAAPS SAENVASGSN ERPRIRHQHS 180 QSMDGSTSIK PEMLMSGSED ASAADAKKAM SAAKLAELAL IDPKRAKRIW ANRQSAARSK 240 ERKMRYIAEL ERKVQTLQTE ATTLSAQLTL LQRDTNGLTA ENSELKLRLQ TMEQQVHLQD 300 ALNEALKEEI QHLKVLTGQS MPNGGPMMNY PSFGSGQQFY PNNHAMHTLL AAQQFQQLQI 360 QSQKQQHQFQ QHQLHHQLQQ QQLQHEQQQP AGDLKFRAPI PSPNQKDGNA AESNSSKME*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MDKDKLTGHS SGLPPPPSGR FAGFSPNANA FSVKPEQPSA AASSSSFLPM AQGQNLVSDF  60
SHDISRMPDN PPRNRGHRRA HSEILTLPDD ISFDSDLGVV GAADGPSFSD DTEEDLFSMY  120
LDMDKFNSSS ATSSFQMGEP SSAPMAMPGA GDSGSGAAPS SAENVASGSN ERPRIRHQHS  180
QSMDGSTSIK PEMLMSGSED ASAADAKKAM SAAKLAELAL IDPKRAKRIW ANRQSAARSK  240
ERKMRYIAEL ERKVQTLQTE ATTLSAQLTL LQRDTNGLTA ENSELKLRLQ TMEQQVHLQD  300
ALNEALKEEI QHLKVLTGQS MPNGGPMMNY PSFGSGQQFY PNNHAMHTLL AAQQFQQLQI  360
QSQKQQHQFQ QHQLHHQLQQ QQLQHEQQQP AGDLKFRAPI PSPNQKDGNA AESNSSKME*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.A00102.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010046685.1	0.0	PREDICTED: probable transcription factor PosF21 isoform X2
Swissprot	Q04088	1e-159	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A059DB53	0.0	A0A059DB53_EUCGR; Uncharacterized protein
STRING	XP_010046629.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-136	bZIP family protein

Link Out ? help Back to Top
Phytozome	Eucgr.A00102.1.p
Entrez Gene	104435578

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]