PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00213.3.p
Common NameEUGRSUZ_A00213
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 375aa    MW: 39627.4 Da    PI: 8.4107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00213.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-10308353655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri  ++ +L+el+P+     +k  s +++L +Av++Ik Lq
  Eucgr.A00213.3.p 308 SIAERERRTRISGRLKKLQELVPNM----DKQTSYSDMLDLAVQHIKTLQ 353
                       689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.808302352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-14305364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.89E-11306357No hitNo description
Gene3DG3DSA:4.10.280.104.1E-13307364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-8308353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-12308358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MYHHHPSSSS SSSHSQKSMG SSGGGGSSGG GGGLTRYSSA PGSLLANAVD SVIGNPNGGH  60
GDFSALGSSS ASVQPPRRHH PHPPPPPSFL GHYFSADSSS LTSESTCKVN PSNGDHQHPP  120
KDNKTTGLQR AFGLNDFGVG IGSSSASPRP SSSSLLRQRS SPAGFLSHHT PDTGFSLTQG  180
AGSSNGGHGF SRLKPQLSFT RQESLSHISE VSENAVEGVS PDNGHQGTTH SYATTSFGID  240
WENSNSIVFS PPSGKRAKNV DGDMYSFNPL ETQTTLEMAT VENLLHIPED SVPCKIRAKR  300
GCATHPRSIA ERERRTRISG RLKKLQELVP NMDKQTSYSD MLDLAVQHIK TLQNQVQKLH  360
HDLDNCTCGC KPSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00213.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054365.10.0PREDICTED: transcription factor bHLH128 isoform X2
SwissprotQ8H1023e-89BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A059DBP50.0A0A059DBP5_EUCGR; Uncharacterized protein
STRINGXP_010054309.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]