PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.A00281.1.p

Common Name

EUGRSUZ_A00281

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 261aa MW: 29393.7 Da PI: 9.4365

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.A00281.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86	5.7e-27	95	183	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k r++ra+tr gCka+++vk +++gkw++tk+++eHnH+l+ Eucgr.A00281.1.p 95 FYDEYARRVGFVMRVMSCRRSERDGKILARRLGCNKEGYCVSIRGKFGPVRKPRASTREGCKAMIHVKVDRSGKWVITKFVKEHNHPLV 183 9************************************99999998**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.6E-25	95	183	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MESGPTMTGR AAGYGGVPHS LSTFSRLAFC SSRHRSPTKR SIKSQPIRIE PMDLEDEAGA 60 TENSGGVELV DCEGDPIVEP CEGMEFDSED AAKIFYDEYA RRVGFVMRVM SCRRSERDGK 120 ILARRLGCNK EGYCVSIRGK FGPVRKPRAS TREGCKAMIH VKVDRSGKWV ITKFVKEHNH 180 PLVISPREAR QTMDEKDKKI QELTAELRNK KRLCAAYQEQ LTAFVKIVEE HNDQLSKKVQ 240 SVVNNIRKYE PVDPGLMRRS *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.A00281.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018715436.1	1e-165	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570
TrEMBL	A0A059DBX8	0.0	A0A059DBX8_EUCGR; Uncharacterized protein
STRING	XP_010064027.1	1e-168	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-109	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Eucgr.A00281.1.p