PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00370.1.p
Common NameEUGRSUZ_A00370, LOC104452218
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 309aa    MW: 35186.3 Da    PI: 4.979
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00370.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.19.5e-42121431128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       lppGfrF+ tdeel+ +yLk+k+ +++  +  ++i+e+d++++ePw+Lp+   +  ++ke++fF++ ++ky +++r+nr+tk+gyWk tg+  
  Eucgr.A00370.1.p  12 LPPGFRFQATDEELLLDYLKPKILRQPdGRHYDMIPEIDVLEFEPWQLPSlfGHMFSSKELFFFCHLKRKYLNSNRSNRTTKAGYWKPTGEVP 104
                       79**********************9996344578***************5343334789********************************** PP

               NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++s+ +++++g++ktLvfy+gr pkg++t+ vmhey l
  Eucgr.A00370.1.p 105 TIMSEdTEAQIGIRKTLVFYEGRMPKGKRTNFVMHEYFL 143
                       ****977788***************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-459168IPR003441NAC domain
PROSITE profilePS5100546.15312168IPR003441NAC domain
PfamPF023655.3E-2113142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MQNTISEVTR SLPPGFRFQA TDEELLLDYL KPKILRQPDG RHYDMIPEID VLEFEPWQLP  60
SLFGHMFSSK ELFFFCHLKR KYLNSNRSNR TTKAGYWKPT GEVPTIMSED TEAQIGIRKT  120
LVFYEGRMPK GKRTNFVMHE YFLKSKCMGN NNDENEMLPY ALCRIKHKKD KKLMKGHAPT  180
ISPGGYSNSH CTDTSNVSET PMNQEGDYLS FCDNLQNEVA DNQEVVYAQP EMSVEELMES  240
LPSSQPLDGI LSYYNTTAAY QPQAAAEEGS SSFFDFSHDN DGNEFSHGYM PSPYSNSTYF  300
SGFDCGNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-3511696166NO APICAL MERISTEM PROTEIN
1ut4_B6e-3511696166NO APICAL MERISTEM PROTEIN
1ut7_A6e-3511696166NO APICAL MERISTEM PROTEIN
1ut7_B6e-3511696166NO APICAL MERISTEM PROTEIN
3swm_A8e-3511699169NAC domain-containing protein 19
3swm_B8e-3511699169NAC domain-containing protein 19
3swm_C8e-3511699169NAC domain-containing protein 19
3swm_D8e-3511699169NAC domain-containing protein 19
3swp_A8e-3511699169NAC domain-containing protein 19
3swp_B8e-3511699169NAC domain-containing protein 19
3swp_C8e-3511699169NAC domain-containing protein 19
3swp_D8e-3511699169NAC domain-containing protein 19
4dul_A6e-3511696166NAC domain-containing protein 19
4dul_B6e-3511696166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00370.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065025.10.0PREDICTED: protein NTM1-like 9
TrEMBLA0A059DBY60.0A0A059DBY6_EUCGR; Uncharacterized protein
STRINGXP_010065025.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3405322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.13e-42NAC transcription factor-like 9