PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.A00435.1.p

Common Name

EUGRSUZ_A00435

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 334aa MW: 38013.2 Da PI: 4.7408

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.A00435.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	140.8	8e-44	12	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFh tdeel+ +yLk+k+ g++ + ++i+e+di+++ePw+Lp + +++ ++ke++ F++ ++ky+++kr+ r+t++gyWk tgk++ Eucgr.A00435.1.p 12 LPPGFRFHATDEELLIHYLKPKILGRPgERYYDMIPEIDICEFEPWQLPsMfCHRFNSKELFLFCRVKRKYSNSKRSDRTTEAGYWKVTGKER 104 79***********************6566788***********5345556889****************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++s+ ++e +g+kktLvfy+gr pkge+t+Wv hey+l Eucgr.A00435.1.p 105 AITSEdTNEPIGIKKTLVFYTGRVPKGERTNWVSHEYQL 143 967778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-48	8	166	IPR003441	NAC domain
PROSITE profile	PS51005	49.502	12	166	IPR003441	NAC domain
Pfam	PF02365	9.2E-22	13	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MENTISEAMR ALPPGFRFHA TDEELLIHYL KPKILGRPGE RYYDMIPEID ICEFEPWQLP 60 SMFCHRFNSK ELFLFCRVKR KYSNSKRSDR TTEAGYWKVT GKERAITSED TNEPIGIKKT 120 LVFYTGRVPK GERTNWVSHE YQLNPNYLGH NEDEMLPYVA CRIKNKKEKK LMMGHAPTVS 180 PEVYPSSPHA PTVSPEVYSS SPHAYTSNVS ETPGNQEGDY SSFCNVPSDE VADNQEAVNA 240 QPEMSVGDFM ESLPSLHPLD DILSDCTPTP TYQAHAGTEE GWSSLFDFSY DSYGDELDYG 300 YMKSPYSNFA NYSNIDWAMS GDFYTTTRED GRS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-35	11	167	16	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-35	11	167	16	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-35	11	167	16	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-35	11	167	16	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-35	11	167	19	169	NAC domain-containing protein 19
3swm_B	1e-35	11	167	19	169	NAC domain-containing protein 19
3swm_C	1e-35	11	167	19	169	NAC domain-containing protein 19
3swm_D	1e-35	11	167	19	169	NAC domain-containing protein 19
3swp_A	1e-35	11	167	19	169	NAC domain-containing protein 19
3swp_B	1e-35	11	167	19	169	NAC domain-containing protein 19
3swp_C	1e-35	11	167	19	169	NAC domain-containing protein 19
3swp_D	1e-35	11	167	19	169	NAC domain-containing protein 19
4dul_A	1e-35	11	167	16	166	NAC domain-containing protein 19
4dul_B	1e-35	11	167	16	166	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.A00435.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010064990.1	0.0	PREDICTED: protein NTM1-like 9
TrEMBL	A0A059DCT8	0.0	A0A059DCT8_EUCGR; Uncharacterized protein
STRING	XP_010065386.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM34396	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	5e-48	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	Eucgr.A00435.1.p