PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00437.1.p
Common NameEUGRSUZ_A00437
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 222aa    MW: 25423.8 Da    PI: 8.3591
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00437.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.65.1e-23487181
               NAM  1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksg 81
                      lppGfrFh tdeel+ +yLk+k+ g++  +  ++i+e+di+++ePw+Lp+   ++ ++ke++fF++ ++ky+++k++ r+t++g
  Eucgr.A00437.1.p  4 LPPGFRFHATDEELLIHYLKPKILGRPgKRYYNMIPEIDICEFEPWQLPAlfYHRFNSKELFFFCRVKRKYSNSKHSDRTTETG 87
                      79*************************6566678***************6344445788*********************9988 PP
2NAM30.79.1e-108411498128
               NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                       +++g++ktLvfy+g+ pkg++t+Wv hey+l
  Eucgr.A00437.1.p  84 TETGIRKTLVFYTGHVPKGKRTNWVSHEYQL 114
                       5689*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-363137IPR003441NAC domain
PROSITE profilePS5100528.2574137IPR003441NAC domain
PfamPF023652.5E-175114IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MRALPPGFRF HATDEELLIH YLKPKILGRP GKRYYNMIPE IDICEFEPWQ LPALFYHRFN  60
SKELFFFCRV KRKYSNSKHS DRTTETGIRK TLVFYTGHVP KGKRTNWVSH EYQLNLNCLG  120
HNEDEMMPYV ACQIKNKKEK KLMMGHTPTV SPEVYSSSPH APTVSPEVCS SSPHAYASNV  180
SETPVNQEGD YSSFCNSPSD KVADNQEAVD AQQMRNLSIN T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-25313816166NO APICAL MERISTEM PROTEIN
1ut4_B3e-25313816166NO APICAL MERISTEM PROTEIN
1ut7_A3e-25313816166NO APICAL MERISTEM PROTEIN
1ut7_B3e-25313816166NO APICAL MERISTEM PROTEIN
3swm_A4e-25313819169NAC domain-containing protein 19
3swm_B4e-25313819169NAC domain-containing protein 19
3swm_C4e-25313819169NAC domain-containing protein 19
3swm_D4e-25313819169NAC domain-containing protein 19
3swp_A4e-25313819169NAC domain-containing protein 19
3swp_B4e-25313819169NAC domain-containing protein 19
3swp_C4e-25313819169NAC domain-containing protein 19
3swp_D4e-25313819169NAC domain-containing protein 19
4dul_A3e-25313816166NAC domain-containing protein 19
4dul_B3e-25313816166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00437.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064990.11e-133PREDICTED: protein NTM1-like 9
TrEMBLA0A059DCC11e-167A0A059DCC1_EUCGR; Uncharacterized protein
STRINGXP_010065407.11e-145(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.18e-38NAC transcription factor-like 9