PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00559.1.p
Common NameEUGRSUZ_A00559
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 246aa    MW: 27960.1 Da    PI: 8.6713
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00559.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-051937523
                      TTTEEESSHHHHHHHHHHT CS
           zf-C2H2  5 dCgksFsrksnLkrHirtH 23
                       Cg +F+ +++L++H++ H
  Eucgr.A00559.1.p 19 ECGATFKKPEYLRQHMQGH 37
                      7***************988 PP
2zf-C2H221.46.7e-077297123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                      ++Cp   C+ksF  + n+krH++  H
  Eucgr.A00559.1.p 72 FSCPidGCDKSFAYQGNMKRHLNEiH 97
                      89********************9988 PP
3zf-C2H214.69.7e-05114138123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++Cp   Cgk+F+    L++H  +H
  Eucgr.A00559.1.p 114 HVCPevGCGKVFKFALKLRKHEDSH 138
                       79*******************9888 PP
4zf-C2H211.20.0012148169323
                       ETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                       C  C k Fs+ ++Lk H+r+ H
  Eucgr.A00559.1.p 148 CCECMKYFSNVDYLKDHMRSaH 169
                       999****************999 PP
5zf-C2H219.62.4e-06194219123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       ++C+   C + Fs+ksnL++H +  H
  Eucgr.A00559.1.p 194 FRCEveGCLRIFSTKSNLRQHVKAvH 219
                       89*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.5361542IPR007087Zinc finger, C2H2
SuperFamilySSF576671.09E-71867No hitNo description
SMARTSM00355371837IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-61841IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.603.9E-74269IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.14367IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.8294370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804567IPR007087Zinc finger, C2H2
SuperFamilySSF576677.85E-854109No hitNo description
Gene3DG3DSA:3.30.160.605.0E-87098IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.5E-47297IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.96572102IPR007087Zinc finger, C2H2
PROSITE patternPS0002807497IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-5112138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.09E-5112166No hitNo description
SMARTSM003550.013114138IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452114143IPR007087Zinc finger, C2H2
PROSITE patternPS000280116138IPR007087Zinc finger, C2H2
SMARTSM003552.5146169IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307146174IPR007087Zinc finger, C2H2
PROSITE patternPS000280148169IPR007087Zinc finger, C2H2
SuperFamilySSF576673.52E-9178234No hitNo description
SMARTSM003554.2E-4194219IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.5E-7194219IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.277194224IPR007087Zinc finger, C2H2
PROSITE patternPS000280196219IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAQGVEGKKG AKANNTSEEC GATFKKPEYL RQHMQGHSLE TPFKCSVEDC SASYRRTDHL  60
ACHFLQHKGK IFSCPIDGCD KSFAYQGNMK RHLNEIHNDE EPSTSGECKS LKQHVCPEVG  120
CGKVFKFALK LRKHEDSHVK LETVEAFCCE CMKYFSNVDY LKDHMRSAHQ LLRKNIQQHL  180
LMHEKKNSAD SEAFRCEVEG CLRIFSTKSN LRQHVKAVHL GVRPFVCGHK DCGKKCAYKH  240
VILRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A8e-161916419155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D8e-161916419155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00559.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034379.11e-157PREDICTED: transcription factor IIIA
SwissprotQ84MZ49e-73TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A059DCN50.0A0A059DCN5_EUCGR; Uncharacterized protein
STRINGXP_010034379.11e-156(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.24e-75transcription factor IIIA