PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00563.1.p
Common NameEUGRSUZ_A00563
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 199aa    MW: 22655.3 Da    PI: 10.0577
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00563.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.001597117623
                       TT..EEESSHHHHHHHHHH.T CS
           zf-C2H2   6 Cg..ksFsrksnLkrHirt.H 23 
                       C   k Fs+ ++Lk H+r+ H
  Eucgr.A00563.1.p  97 CEytKYFSNVDYLKDHMRSaH 117
                       66669*************999 PP
2zf-C2H217.11.6e-05154177323
                       ET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                       C    C + Fs+ksnL +H +  H
  Eucgr.A00563.1.p 154 CDfeGCQRIFSTKSNLCQHVKAvH 177
                       77889**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551695117IPR015880Zinc finger, C2H2-like
SMARTSM0035578120141IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.6E-7133185No hitNo description
Gene3DG3DSA:3.30.160.602.3E-6152177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.759152182IPR007087Zinc finger, C2H2
SMARTSM003550.0059152177IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280154177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MIIALNPVKL GPEQHRSKRL FQLVALVPRA LRDLQVQEVP RHFSHPVAPR GEFSSLHCLP  60
MVPKKLGSFW AVSSGATKLR KHEDSHVKLE TVEAFYCEYT KYFSNVDYLK DHMRSAHQLV  120
NCNICGTKQL RKNIQRHLCT HEKKNSADSG AFGCDFEGCQ RIFSTKSNLC QHVKAVHLEV  180
RPFVWAIRIV ARSLHIST*
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00563.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034379.11e-56PREDICTED: transcription factor IIIA
SwissprotQ84MZ42e-30TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A059DBP41e-146A0A059DBP4_EUCGR; Uncharacterized protein
STRINGXP_010034379.16e-56(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.12e-33transcription factor IIIA