PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00567.1.p
Common NameEUGRSUZ_A00567
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 346aa    MW: 40143.8 Da    PI: 8.4574
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00567.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000862042123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y C++Cg + s ks+ ++Hi++H
  Eucgr.A00567.1.p 20 YYCEYCGICRSKKSLITSHIQSH 42
                      89********************6 PP
2zf-C2H2163.5e-056586223
                      EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                      +C+ Cg +F+ + +L++H + H
  Eucgr.A00567.1.p 65 TCEECGATFNKPAYLRQHVQGH 86
                      6*****************9877 PP
3zf-C2H220.71.1e-06121146123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       ++Cp   C+ksF  + n+krH++  H
  Eucgr.A00567.1.p 121 FSCPvdGCDKSFAYQGNMKRHLNEiH 146
                       89********************9988 PP
4zf-C2H219.13.6e-06163187123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++Cp   Cgk+F+  s L++H  +H
  Eucgr.A00567.1.p 163 HVCPeiGCGKVFKFASKLRKHEDSH 187
                       79*******************9888 PP
5zf-C2H215.26e-05240265123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       ++C    C   Fs+ksnL +H +  H
  Eucgr.A00567.1.p 240 FRCDfeGCQLIFSTKSNLCQHVKAvH 265
                       89999****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355182042IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.7576491IPR007087Zinc finger, C2H2
SMARTSM003550.0696486IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.01E-865116No hitNo description
Gene3DG3DSA:3.30.160.601.4E-76590IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-791118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.392116IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.78792119IPR007087Zinc finger, C2H2
PROSITE patternPS00028094116IPR007087Zinc finger, C2H2
SuperFamilySSF576671.58E-8102158No hitNo description
Gene3DG3DSA:3.30.160.603.0E-8119147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.965121151IPR007087Zinc finger, C2H2
SMARTSM003551.8E-4121146IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123146IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-6161187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0088163187IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242163192IPR007087Zinc finger, C2H2
PROSITE patternPS000280165187IPR007087Zinc finger, C2H2
SMARTSM00355120198218IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.1E-9220282No hitNo description
SMARTSM003550.0012240265IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.115240270IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.5E-6240265IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280242265IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-4266293IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767271297IPR007087Zinc finger, C2H2
SMARTSM0035518271297IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280273297IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGQEERCEKP GPVFRDIRRY YCEYCGICRS KKSLITSHIQ SHHQKVEAAM AQGVEWKEGA  60
KANNTCEECG ATFNKPAYLR QHVQGHSLER PFKCSIEDCS ASYRRKYHLA CHFLQHKGKI  120
FSCPVDGCDK SFAYQGNMKR HLNEIHNDEE PLMSGECKSL KQHVCPEIGC GKVFKFASKL  180
RKHEDSHVKL ETVEAFFSEC MKYFSNVDFL KEHVRSAHQL NIQRHLRTHE KKNSADSEAF  240
RCDFEGCQLI FSTKSNLCQH VKAVHLEVRP FVCDHKDCGK KFAYKHVRDH HEKIGCHVYT  300
PGDFEELDEQ FRSRPKGGRK RKCLTIESLL QKRVTLPNEL DFPFGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A5e-186821319155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D5e-186821319155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313321RPKGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00567.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034379.10.0PREDICTED: transcription factor IIIA
SwissprotQ84MZ41e-110TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A059DD630.0A0A059DD63_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010034379.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-113transcription factor IIIA