PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00588.1.p
Common NameEUGRSUZ_A00588
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 306aa    MW: 35144.1 Da    PI: 8.732
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00588.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000151937523
                      TTTEEESSHHHHHHHHHHT CS
           zf-C2H2  5 dCgksFsrksnLkrHirtH 23
                       Cg +F+ + +L++H++ H
  Eucgr.A00588.1.p 19 ECGATFKKPTYLRQHMQGH 37
                      7***************988 PP
2zf-C2H215.35.8e-054367123
                      EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                      +kC+  dC+ s++rk++L rH   H
  Eucgr.A00588.1.p 43 FKCSieDCSASYRRKDHLARHFLQH 67
                      89*******************7766 PP
3zf-C2H220.71.1e-067297123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                      ++Cp   C+ksF  + n+krH++  H
  Eucgr.A00588.1.p 72 FSCPvdGCNKSFAYQGNMKRHLNEiH 97
                      89********************9988 PP
4zf-C2H216.23e-05114135120
                       EEET..TTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHi 20 
                       ++C+   Cgk+F+  s L++H 
  Eucgr.A00588.1.p 114 HVCSevGCGKVFKFASKLQKHE 135
                       789999***************6 PP
5zf-C2H210.70.0016148169323
                       ETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                       C  C k Fs+ ++Lk H+r+ H
  Eucgr.A00588.1.p 148 CCECMKYFSNVDYLKDHMRLaH 169
                       999****************988 PP
6zf-C2H214.30.00012204229123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       ++C+   C + Fs ksnL++H +  H
  Eucgr.A00588.1.p 204 FRCEveGCLRIFSIKSNLRQHVKAvH 229
                       89*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.1411542IPR007087Zinc finger, C2H2
SuperFamilySSF576672.2E-81867No hitNo description
SMARTSM00355371837IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.9E-61843IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.7434370IPR007087Zinc finger, C2H2
SMARTSM003550.00934367IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-84469IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002804567IPR007087Zinc finger, C2H2
SuperFamilySSF576675.53E-953109No hitNo description
Gene3DG3DSA:3.30.160.605.7E-87098IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.06972102IPR007087Zinc finger, C2H2
SMARTSM003551.6E-47297IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807497IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.8E-6112135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035530114136IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.683114143IPR007087Zinc finger, C2H2
PROSITE profilePS501578.85146169IPR007087Zinc finger, C2H2
SMARTSM003554.2146169IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280148169IPR007087Zinc finger, C2H2
SMARTSM0035530172193IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.1E-6185226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.64E-9186246No hitNo description
PROSITE profilePS5015712.944204234IPR007087Zinc finger, C2H2
SMARTSM003550.0077204229IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280206229IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-4228258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035527235261IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.683235266IPR007087Zinc finger, C2H2
PROSITE patternPS000280237261IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAQGVEGKEG AKANNTSEEC GATFKKPTYL RQHMQGHLLE TPFKCSIEDC SASYRRKDHL  60
ARHFLQHKGK IFSCPVDGCN KSFAYQGNMK RHLNEIHNDE EPSTSGECNS LKQHVCSEVG  120
CGKVFKFASK LQKHEDSYVK LETVEAFCCE CMKYFSNVDY LKDHMRLAHQ LVNCNICGTK  180
QLRKNIQRHL LTHEKKNSAD SEAFRCEVEG CLRIFSIKSN LRQHVKAVHL GVRPFVCGHK  240
DCGKKFAYKH VRDHHEKTGC HGDFEELDEQ FQSRPRGRRK RKCPTIESLL RKRVTLPNEL  300
DFLLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A1e-151916719158PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D1e-151916719158PROTEIN (TRANSCRIPTION FACTOR IIIA)
5v3j_E5e-15102581251Zinc finger protein 568
5v3j_F5e-15102581251Zinc finger protein 568
5v3m_C5e-15102581251Zinc finger protein 568
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273281RPRGRRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00588.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034379.10.0PREDICTED: transcription factor IIIA
SwissprotQ84MZ41e-103TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A059DCH80.0A0A059DCH8_EUCGR; Uncharacterized protein
STRINGXP_010034379.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-106transcription factor IIIA