PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00588.3.p
Common NameEUGRSUZ_A00588, LOC104424623
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 227aa    MW: 26383.2 Da    PI: 8.177
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00588.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-05832123
                      EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                      +kC+  dC+ s++rk++L rH   H
  Eucgr.A00588.3.p  8 FKCSieDCSASYRRKDHLARHFLQH 32
                      89*******************7766 PP
2zf-C2H221.27.5e-073762123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                      ++Cp   C+ksF  + n+krH++  H
  Eucgr.A00588.3.p 37 FSCPvdGCNKSFAYQGNMKRHLNEiH 62
                      89********************9988 PP
3zf-C2H216.72e-0579100120
                       EEET..TTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHi 20 
                       ++C+   Cgk+F+  s L++H 
  Eucgr.A00588.3.p  79 HVCSevGCGKVFKFASKLQKHE 100
                       789999***************6 PP
4zf-C2H211.30.0011113134323
                       ETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                       C  C k Fs+ ++Lk H+r+ H
  Eucgr.A00588.3.p 113 CCECMKYFSNVDYLKDHMRLaH 134
                       999****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.2E-9534IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.85E-6534No hitNo description
PROSITE profilePS501579.743835IPR007087Zinc finger, C2H2
SMARTSM003550.0093832IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801032IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-83563IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.98E-73563No hitNo description
PROSITE profilePS5015713.0693767IPR007087Zinc finger, C2H2
SMARTSM003551.6E-43762IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803962IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-676100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553079101IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.68379108IPR007087Zinc finger, C2H2
PROSITE profilePS501578.85111134IPR007087Zinc finger, C2H2
SMARTSM003554.2111134IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280113134IPR007087Zinc finger, C2H2
SMARTSM0035530137158IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MFYLETPFKC SIEDCSASYR RKDHLARHFL QHKGKIFSCP VDGCNKSFAY QGNMKRHLNE  60
IHNDEEPSTS GECNSLKQHV CSEVGCGKVF KFASKLQKHE DSYVKLETVE AFCCECMKYF  120
SNVDYLKDHM RLAHQLVNCN ICGTKQLRKN IQRHLLTHEK KNSADSEAFR CEVEGCLRIF  180
SIGDFEELDE QFQSRPRGRR KRKCPTIESL LRKRVTLPNE LDFLLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A9e-12513240158PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D9e-12513240158PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194202RPRGRRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00588.3.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018726658.11e-158PREDICTED: transcription factor IIIA
RefseqXP_018726663.11e-158PREDICTED: transcription factor IIIA
SwissprotQ84MZ43e-62TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A059DCR01e-166A0A059DCR0_EUCGR; Uncharacterized protein
STRINGXP_010035426.11e-157(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-64transcription factor IIIA