PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00998.1.p
Common NameEUGRSUZ_A00998, LOC104434287
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 542aa    MW: 59196.7 Da    PI: 7.7081
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00998.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.14.3e-15369416355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + hn  ErrRRdriN+++  L+ellP++      K++Ka++L +++eY+k Lq
  Eucgr.A00998.1.p 369 TIHNLSERRRRDRINKRMRALQELLPNC-----DKVDKASVLDEVIEYLKTLQ 416
                       56*************************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.60E-9363420No hitNo description
Gene3DG3DSA:4.10.280.101.8E-18365424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-19366439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.873366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-12369416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-16372421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MPDREFVELV WENGTIAMRG SSPPSRCIAS RRSDYGKVAY KAPDPGNRVK NPLPGDLYLR  60
DVAHRNGVDP SARGNANDDD LAAPDDKNKT CAADAASKHG EADHPVSSRN ESLFIRKFSC  120
PNETREGGNH CPPWSPMRQG RDSAQFVGLG LCPIPHPSPG DHCSSNAMVL REPNSLGKPS  180
NANFSFFLRQ PVVLGANKRL ASELPMRLPT DEDLPRAKIK TDKRAGTGDA RQAPLTEPAA  240
AFGRRTDLVD DKAKPMFTDD KTSGNAFPDE HSQVLGGEDN SLRNRKSNDQ CWDPSSTIAA  300
TAIDKTMLGE RQPCDPTPVA SSSVCSREAS NHVAGPLKRK HEDSESIYPG EDEDDETEKV  360
KRKVRRRTTI HNLSERRRRD RINKRMRALQ ELLPNCDKVD KASVLDEVIE YLKTLQGQLQ  420
IMSTRSPLFM PPMMLASGVH NMHAPHMRQF PLGMGMRMGA GADCGPFQLP IPPLSGATSL  480
PQSNGTGIPM FGVQPIPYLP FMPTLTQPIP AVDVSGTTTA FEHGESADPS GNCDVIQNKK  540
F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358364KVKRKVR
2360378KRKVRRRTTIHNLSERRRR
3364378RRRTTIHNLSERRRR
4366378RTTIHNLSERRRR
5374379ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00998.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045552.10.0PREDICTED: transcription factor PIL1
TrEMBLA0A059DEG00.0A0A059DEG0_EUCGR; Uncharacterized protein
STRINGXP_010045552.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3455622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46970.12e-18phytochrome interacting factor 3-like 1