PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01001.1.p
Common NameEUGRSUZ_A01001, LOC104434318
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 536aa    MW: 57483.4 Da    PI: 6.8566
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30280338259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d+ ++++tYeg+Hnh+
  Eucgr.A01001.1.p 280 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCADDKAILITTYEGNHNHP 338
                       7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-33264340IPR003657WRKY domain
SuperFamilySSF1182901.31E-27273340IPR003657WRKY domain
PROSITE profilePS5081129.149274340IPR003657WRKY domain
SMARTSM007742.9E-37279339IPR003657WRKY domain
PfamPF031068.6E-27281338IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MDGQRGELTF LHSRDFLRRS PAPPPADDGA AAGSSHGPSD SKPPIREVDF FSSGNCSKLN  60
SDEEESKDCH GLSRSTLSDP RTGLNLLSLN SGMATATGDD CSNHDTEMRM LRGELDRLHE  120
ENCKLKSMLD QIAKSYNNLQ AQLLMAMQKQ AHLNHSEQQR DEMTSMSSPT KSAQQLMDLR  180
PACAAIDNVK EEEKTREVSV SPTTTMEVMS KESDHIHTPP LNGTNNNHNI EDGDRASESW  240
GSPKSPRLEP SKGGEEQLAD MPFRKARVSV RARSEAPSIS DGCQWRKYGQ KMAKGNPCPR  300
AYYRCTMAVG CPVRKQVQRC ADDKAILITT YEGNHNHPLP PAATAMANTT SAAAAMLLSG  360
STTSKETLAS TNPGYFPSLP YPSTIATLSA SAPFPTITLD LTQNHNPMQL FPRPPPQTSA  420
TFPLPLHGYA AQMMGQVQHS MKLPAMPMLQ PGLGQRHASL VESVSAAIAS DPNFTAALAA  480
ALSTVMGGAP PRNGPDGNIN ANNNNSGNNH FLPAGVGVLP GSPQLPQSCT TFSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-21266342176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045571.10.0PREDICTED: probable WRKY transcription factor 47
TrEMBLA0A059DCZ60.0A0A059DCZ6_EUCGR; Uncharacterized protein
STRINGXP_010045571.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.11e-86WRKY family protein