PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01019.1.p
Common NameEUGRSUZ_A01019, LOC104434497
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 984aa    MW: 109055 Da    PI: 6.1144
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.95.4e-42153230178
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       +Cqve+C adls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++
  Eucgr.A01019.1.p 153 VCQVEDCGADLSNAKDYHRRHKVCEMHSKATKALVGNIMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTNP 230
                       6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.4E-34147215IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.334151228IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.02E-38152232IPR004333Transcription factor, SBP-box
PfamPF031102.8E-30154227IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.03E-6754869IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.8E-5757872IPR020683Ankyrin repeat-containing domain
CDDcd002041.05E-5758868No hitNo description
PROSITE profilePS500888.816809832IPR002110Ankyrin repeat
PROSITE profilePS502978.72809832IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 984 aa     Download sequence    Send to blast
MEARVEAQAP RHFYGLPPVD LRALGKRSVE WDSNDWKWDG DLFVARPLNP VPSDFPGRQF  60
LPLENGIPAA AGNSSNSSSS CSDEVNLRTD DGKRELEKRR RVIVVEDDNS DDKAGGLTLK  120
LGGYPVADRD VGTWEGNSGK KTKLAGGSAS RAVCQVEDCG ADLSNAKDYH RRHKVCEMHS  180
KATKALVGNI MQRFCQQCSR FHALQEFDEG KRSCRRRLAG HNKRRRKTNP EATPNANSVN  240
DEQASSYLLI SLLKILTSIH SNQSKQATDQ DLLAHILRSI ASSTSGHGER NISGLLQESQ  300
AILNGGTSLA NSELVHPMSS KGVEGPSRLV QPQAAGPASQ ILANGREATG GQSKLNNFDL  360
NDTYIDSDDG MEDLDRSPVP ANLGTSSIDC PSWMQQESHQ SSPPQTSGTS DSASAQSPSS  420
SSGDTQSRTD RIVFKLFGKD PNDFPLLLRT QILDWLSHSP TDIESYIRPG CIVLTVYLRQ  480
DEDAWEELCY DLSSSLNRLL DVSDDFFWKT GWMYMRMQHQ MAFIYNGQVV VDTSLCLRSM  540
NCSRIMSIRP IATSSSETTQ FSVKGFNMCH PATRLLCALE GTYLVQEATL ELMNEEDSLE  600
EHDELQCVKF SCSIPRVTGR GFIEVENGGL PGSFFPFIVA ESDVCLEIRS LENALEFVEA  660
DADDHGTSKF AAKNQAFEFI QEMGWILHRS GLRSRLRQLD PYTDSFSFKR FKWLIEFSMD  720
HDWCAVVKKL LDILFDGTVG AGEHPSIYHA VLEMGLVHRA VRRNCRPLVQ LLLRYIPQSV  780
SEKLESELKS LISGSHQNFL FRPDAVGPAG LTPLHIAAGK DDSEDVLDAL IDDPGMVGIE  840
AWKTARDSTG STPEDYARLR GHYSYIHLVQ KKINKRPSVP HVVLDIPDAV PDSNGVQKQN  900
KETTSSFEIG KTEQQLAHKS CKLCSQKVAY GMRSRSLLYR PTMLSMVGIA AVCVCVALLF  960
KSCPEVLYVF QPFRWEALDF GSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-31145227284squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197101KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01019.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045710.10.0PREDICTED: squamosa promoter-binding-like protein 1
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A059DE140.0A0A059DE14_EUCGR; Uncharacterized protein
STRINGXP_010045710.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]