PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.A01143.1.p

Common Name

EUGRSUZ_A01143, LOC104435593

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

TCP

Protein Properties

Length: 207aa MW: 21680.5 Da PI: 7.9026

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.A01143.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	101.1	1.9e-31	47	119	7	66
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............s 66 + ++hTkv+gR+RR+R++a+caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tg Eucgr.A01143.1.p 47 PARDRHTKVNGRGRRIRIPALCAARIFQLTRELGHRSDGETIEWLLRCAEPSIIAATGYgsmpadpitttvgA 119 5689*******************************************************44444444444440 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	25.035	48	102	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.8E-26	48	112	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MGSIVSPQDF PSSDQNSPPN LAAAAVEAPP PKPHRQVALS RKSTAAPARD RHTKVNGRGR 60 RIRIPALCAA RIFQLTRELG HRSDGETIEW LLRCAEPSII AATGYGSMPA DPITTTVGAL 120 PPSSTPASAP CPAQPLALAP PAAGHGAFPI SPPPDCRLDL SQPNGFDFSA GGCATNGYRH 180 MPFTALLLQP TATEEAEERQ QREILG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.A01143.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010046620.1	1e-147	PREDICTED: transcription factor TCP11
Swissprot	Q9SJK7	1e-38	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A059DDZ6	1e-146	A0A059DDZ6_EUCGR; Uncharacterized protein
STRING	XP_010046620.1	1e-147	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15265	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	5e-38	TCP family protein

Link Out ? help Back to Top
Phytozome	Eucgr.A01143.1.p
Entrez Gene	104435593