PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.A01168.1.p

Common Name

EUGRSUZ_A01168, LOC104435758

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

S1Fa-like

Protein Properties

Length: 85aa MW: 9120.84 Da PI: 10.19

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.A01168.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	132.4	1.2e-41	19	84	5	70
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +++a G+nPGlivll+v+glll+flvgny+lyvyaqk+lPP+kkkPvskkk+kreklkqGv++PGe Eucgr.A01168.1.p 19 AADAGGFNPGLIVLLLVAGLLLIFLVGNYVLYVYAQKTLPPKKKKPVSKKKMKREKLKQGVSAPGE 84 56889************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	3.2E-39	21	84	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
MAEDFEFADQ VPPSFDGKAA DAGGFNPGLI VLLLVAGLLL IFLVGNYVLY VYAQKTLPPK 60 KKKPVSKKKM KREKLKQGVS APGE*

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.A01168.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010046757.1	4e-53	PREDICTED: DNA-binding protein S1FA
Swissprot	Q7XLX6	1e-14	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	A0A059DF13	9e-52	A0A059DF13_EUCGR; Uncharacterized protein
STRING	XP_010046757.1	2e-52	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2823	27	69

Link Out ? help Back to Top
Phytozome	Eucgr.A01168.1.p
Entrez Gene	104435758

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]