PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01179.1.p
Common NameEUGRSUZ_A01179, LOC104435840
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YB
Protein Properties Length: 178aa    MW: 19106.3 Da    PI: 6.9607
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01179.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB185.73.4e-5827124198
             NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                       vreqdr+lPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plk+yl++yre+
  Eucgr.A01179.1.p  27 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYLDPLKIYLARYREM 119
                       69******************************************************************************************* PP

             NF-YB  94 egekk 98 
                       eg++k
  Eucgr.A01179.1.p 120 EGDTK 124
                       **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.3E-5426138IPR009072Histone-fold
SuperFamilySSF471131.21E-4030127IPR009072Histone-fold
PfamPF008083.6E-283397IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.0E-206179No hitNo description
PROSITE patternPS0068506480IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.0E-208098No hitNo description
PRINTSPR006153.0E-2099117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MAEAPASPGG GGSHDSGEHS PRSGGPVREQ DRYLPIANIS RIMKKALPAN GKIAKDAKET  60
VQECVSEFIS FITSEASDKC QREKRKTING DDLLWAMATL GFEDYLDPLK IYLARYREME  120
GDTKGSAKVG EASTKRDGAA VQSVPNAQIA HQGSFSHGTN YSHSQVHHPA LPMHGSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4827118192Transcription factor HapC (Eurofung)
4g92_B2e-4827118192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01179.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8622143e-88KJ862214.1 Triticum aestivum eukaryotic transcription factor NF-Y subunit B2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046844.11e-131PREDICTED: nuclear transcription factor Y subunit B-1
SwissprotQ8VYK43e-82NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A059DEM01e-129A0A059DEM0_EUCGR; Uncharacterized protein
STRINGXP_010046844.11e-130(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.16e-82nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]