PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01182.1.p
Common NameEUGRSUZ_A01182
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 232aa    MW: 25446.3 Da    PI: 6.7377
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01182.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.15.1e-142575155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      s+y+GV+ +k  grW+A+   +     + k+++lg f+++ eAa+a+++a+ k +g
  Eucgr.A01182.1.p 25 SKYRGVTMHK-CGRWEARMGQF----LSkKYIYLGLFDSEIEAARAYDKAAIKCNG 75
                      89********.7******5553....235**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-92575IPR001471AP2/ERF domain
CDDcd000186.34E-262585No hitNo description
SuperFamilySSF541712.88E-172584IPR016177DNA-binding domain
PROSITE profilePS5103215.7912683IPR001471AP2/ERF domain
SMARTSM003805.1E-322689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-172683IPR001471AP2/ERF domain
PRINTSPR003678.7E-72738IPR001471AP2/ERF domain
PRINTSPR003678.7E-76585IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSNFTKEEFV HTLRRQSTGF ARGSSKYRGV TMHKCGRWEA RMGQFLSKKY IYLGLFDSEI  60
EAARAYDKAA IKCNGREAVT NFEPSKYEEE EEEIDGNHSL DLNLGIAPPE KLDSTGGPRF  120
PLQWNDMHCH PIPRIENSYS AISGAQELHH PAVVSEHLSC LSGQNSIFFP MHKGTALEKR  180
AEVDPLSNWA SQFGGPHGGT TPAPFFSTAA SSGFSSSVAA SPSAAAYHQY L*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01182.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018728721.11e-171PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotQ8H4435e-59AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A059DF431e-173A0A059DF43_EUCGR; Uncharacterized protein
STRINGXP_010068165.11e-141(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.37e-55related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]