PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01195.1.p
Common NameEUGRSUZ_A01195, LOC104435925
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 468aa    MW: 51271.7 Da    PI: 8.9348
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01195.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.4e-32195251360
                       -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geH h+k
  Eucgr.A01195.1.p 195 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSF-DGRIAEIVYKGEHSHPK 251
                       9***************************************.***************85 PP
2WRKY105.52.8e-33386443259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        Dg++WrKYGqK+vkg+++prsYYrCts +C+v+k+ver++edp+++++tYeg+Hnhe
  Eucgr.A01195.1.p 386 GDGFRWRKYGQKVVKGNPYPRSYYRCTSVKCNVRKHVERASEDPRAFITTYEGKHNHE 443
                       6********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-29188252IPR003657WRKY domain
SuperFamilySSF1182901.7E-25192252IPR003657WRKY domain
SMARTSM007743.1E-36193251IPR003657WRKY domain
PfamPF031065.5E-25195250IPR003657WRKY domain
PROSITE profilePS5081123.915195252IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-33373445IPR003657WRKY domain
PROSITE profilePS5081135.049380445IPR003657WRKY domain
SuperFamilySSF1182901.83E-28380445IPR003657WRKY domain
SMARTSM007741.4E-38385444IPR003657WRKY domain
PfamPF031065.4E-26387443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
METKETDRVV IAKPVASRPT SSNFQSFSEL LAGAINSSPP NACTESAVAT IRPKTVRFKP  60
VPNRAPTAVN SSQAEVSGTA TGNSNDKALK SDEKPTVIYK PLAKLVSRST VSLLANMGSF  120
NMAHHQTLSV AEARVKSQLQ DKNNSRSQPI GNLHRSVSSQ ADMDGTSEPL RLASQNMEED  180
TRTSPALNMD RPSYDGYNWR KYGQKQVKGS EYPRSYYKCT HPNCPVKKKV ERSFDGRIAE  240
IVYKGEHSHP KPQPPKRSLS GTQGLGNVLE GSGLDSTNNR LNERDECSED RVENKNLALT  300
TYHGKGPLAY DPIANVASNA GGATPDNSCG ISCEYDDGSK ELEVEDDEPK NKRRKSDNQL  360
NEPGISGEGI QEARAVQNST DSEIVGDGFR WRKYGQKVVK GNPYPRSYYR CTSVKCNVRK  420
HVERASEDPR AFITTYEGKH NHEMPLRSTN TAGSESDLQA ASSKDKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-32195445777Probable WRKY transcription factor 4
2lex_A5e-32195445777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01195.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046937.10.0PREDICTED: WRKY transcription factor 44 isoform X1
RefseqXP_010046944.10.0PREDICTED: WRKY transcription factor 44 isoform X1
TrEMBLA0A059DEN80.0A0A059DEN8_EUCGR; Uncharacterized protein
STRINGXP_010046937.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83622740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-109WRKY family protein