PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01232.1.p
Common NameEUGRSUZ_A01232, LOC104436319, ZFP6
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 182aa    MW: 20215.7 Da    PI: 10.3115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01232.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00114365123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      +kC+ C++ F++   L  H  +H
  Eucgr.A01232.1.p 43 FKCKTCNRQFPSFQALGGHRASH 65
                      89**********99999998887 PP
2zf-C2H213.20.0002792114123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg  Fs    L  H+r+H
  Eucgr.A01232.1.p  92 HECSICGLKFSLGQALGGHMRRH 114
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.22E-53971No hitNo description
SMARTSM003550.0834365IPR015880Zinc finger, C2H2-like
PfamPF139122.7E-124367IPR007087Zinc finger, C2H2
PROSITE profilePS501579.934370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SuperFamilySSF576677.69E-688115No hitNo description
SMARTSM003550.1492114IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.16292114IPR007087Zinc finger, C2H2
PfamPF139129.6E-992115IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MMKRSRDDYE RMNLDMAKCL MLLTHGVNAN PKTAAVHHHE DNFKCKTCNR QFPSFQALGG  60
HRASHKKPKL LETKPEDSTK SVLGTTANPK MHECSICGLK FSLGQALGGH MRRHRVQLMS  120
GSGSVMKMDE IFVVGPTIPV LKRSKSSNKR VMGLDLNLTP LENDLKFLFG KMAPEIDALL  180
L*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01232.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4801940.0KC480194.1 Eucalyptus grandis C2H2-type zinc finger protein 6 (ZFP6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047364.11e-132PREDICTED: zinc finger protein ZAT11
SwissprotQ9SLD48e-49ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLM9Z1Z01e-131M9Z1Z0_EUCGR; C2H2-type zinc finger protein 6
STRINGXP_010047364.11e-132(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.14e-51C2H2 family protein