PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01544.1.p
Common NameEUGRSUZ_A01544
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 258aa    MW: 27565.1 Da    PI: 4.4633
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01544.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind73.83.1e-23148206260
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 
                       Fl+k++++++d++l+ +isw ++g+sfvv+d+ efa++vLp+ Fkh nf+SFvRQLn+Y
  Eucgr.A01544.1.p 148 FLSKTFDLVDDRSLDPIISWGSSGESFVVWDPVEFARSVLPRNFKHGNFSSFVRQLNTY 206
                       9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.3E-24142206IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.98E-22144206IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-20144228IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-19148206IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-11148171IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-11186198IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-11199211IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MNPEEERYPK SPPGSPDRGR GKGKAPAGAG SSSSAALQPE TPSFVMGSEA LPSGSFFDME  60
SIGLSGSPLP LMEFEAFSPL NTSSSFDLFF EVKPEPVLET TRPLGPPFGA GAAETEEAGF  120
PARGGDMETT VGAPQPLERL QGTPVPPFLS KTFDLVDDRS LDPIISWGSS GESFVVWDPV  180
EFARSVLPRN FKHGNFSSFV RQLNTYVGIC WNTAFIGCCS LSVNAFFSLC LFLGSARLTL  240
IDGSLLMKLF REGRGNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A4e-16142206165HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A4e-16142206165HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01544.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049896.11e-142PREDICTED: heat stress transcription factor A-3 isoform X1
TrEMBLA0A059DEQ90.0A0A059DEQ9_EUCGR; Uncharacterized protein
STRINGXP_010049896.11e-141(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2290244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-35heat shock transcription factor A3