PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01674.2.p
Common NameEUGRSUZ_A01674, LOC104439509
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family E2F/DP
Protein Properties Length: 367aa    MW: 39516 Da    PI: 6.2544
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01674.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.41e-27115195271
           E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse..............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e              d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Eucgr.A01674.2.p 115 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpgnsaatpdqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 195
                       689********...*****999*****************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094043.0E-1311366IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.4E-46110200IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.4E-35114195IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.9E-25116195IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.54E-22117196IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.87E-44200303IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.44E-43201316No hitNo description
SMARTSM011381.5E-71202364IPR014889Transcription factor DP, C-terminal
PfamPF087815.3E-41203308IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MVIGSSSSNH NHQEDVERNP VAAAGAGAGA AVPRSGGGGG SRSWGTTVSG QSVSTSGSMG  60
SPSSRSEQAM ATPASESTFL RMNHLDIQGD DAGSQGDVGG KKKKRGQRAA AGDKSGRGLR  120
QFSMKVCEKV ESKGRTTYNE VADELVAEFA DPGNSAATPD QYDEKNIRRR VYDALNVLMA  180
MDIISKDKKE IQWKGLPRTS LNDIEELKTE RHGLRNRIEK KAAYLQELEE QYVGLQNLIQ  240
RNEQLFSTGN APNGGIALPF ILVQTRPHAT VEVEISEDMQ LVHFDFNSTP FELHDDNYVL  300
KAMKFCETPG NDEMVPVFPS DGGEGSSMSG MYQPQPPYPP MSSAAGRPAA SPPLPGILKA  360
RVKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-38108200193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01674.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010050878.10.0PREDICTED: transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-164DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A059DFN90.0A0A059DFN9_EUCGR; Uncharacterized protein
STRINGXP_010050871.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-134Transcription factor DP