PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01715.1.p
Common NameEUGRSUZ_A01715, LOC104439742
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 773aa    MW: 83947.7 Da    PI: 5.7227
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01715.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-20101156156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Eucgr.A01715.1.p 101 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRQLGLEPLQVKFWFQNKRTQMK 156
                       688999***********************************************999 PP
2START232.98.6e-732905111206
                       HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
             START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                       ela +a++el+++a+ +ep+W++s      + +n+de++++f+++ +     +++ea+r+s+vv+m++ +lve+l+d++ qW++ +     +a
  Eucgr.A01715.1.p 290 ELAVAAMEELIRMAQMGEPLWSESLdgnssSVLNEDEYMKTFPRGIGpkpagFNTEASRESAVVIMDHINLVEILMDVN-QWSTVFSsivsRA 381
                       57899*********************999999************999********************************.************* PP

                       EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS
             START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165
                       +tlev+s+g      galq+m+ae+q+++plvp R+++fvRy++q+g+g w++vdvS+d+ ++ p    +vR++++pSg++i++++ng+skvt
  Eucgr.A01715.1.p 382 ATLEVLSTGvagnynGALQVMTAEFQVPTPLVPtREVYFVRYCKQHGDGAWAVVDVSLDNVRPSP----IVRCRRRPSGCVIQEMPNGYSKVT 470
                       ***************************************************************99....7*********************** PP

                       EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       wve+v++++r +h+l+++lv+sg+a gak+wvatl+rqce+
  Eucgr.A01715.1.p 471 WVENVEVDDRGVHSLYKQLVNSGHALGAKRWVATLDRQCER 511
                       ***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-2280156IPR009057Homeodomain-like
SuperFamilySSF466891.42E-1986158IPR009057Homeodomain-like
PROSITE profilePS5007116.92598158IPR001356Homeobox domain
SMARTSM003891.2E-1999162IPR001356Homeobox domain
CDDcd000862.15E-19101159No hitNo description
PfamPF000463.5E-18101156IPR001356Homeobox domain
PROSITE patternPS000270133156IPR017970Homeobox, conserved site
PROSITE profilePS5084846.485281514IPR002913START domain
SuperFamilySSF559612.09E-38281513No hitNo description
CDDcd088751.40E-129285510No hitNo description
SMARTSM002346.3E-69290511IPR002913START domain
PfamPF018521.4E-61291511IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-7360510IPR023393START-like domain
SuperFamilySSF559612.75E-24531764No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MPAGIMIPAR NMSSSPMIGS NGNASGYGSS SGLTLGQPNM MESLHHHQLH HPLDMAHQTP  60
SESELARLRD EEFEISTKSG SENQEGQSGD DMQDLQRPNK KKRYHRHTQH QIQEMEAFFK  120
ECPHPDDKQR KELSRQLGLE PLQVKFWFQN KRTQMKTQHE RGENTQLRAE NDKLRADNMR  180
YREALSNATC PNCGGPTAIG EMSFDEHHLR LENARLREEI DRISAIAAKY VGKPVVNYPL  240
LSPSAPPRPL DLGVGGFGGQ SSVGGEIYGA GDLLKSIGAP TEADKPMIIE LAVAAMEELI  300
RMAQMGEPLW SESLDGNSSS VLNEDEYMKT FPRGIGPKPA GFNTEASRES AVVIMDHINL  360
VEILMDVNQW STVFSSIVSR AATLEVLSTG VAGNYNGALQ VMTAEFQVPT PLVPTREVYF  420
VRYCKQHGDG AWAVVDVSLD NVRPSPIVRC RRRPSGCVIQ EMPNGYSKVT WVENVEVDDR  480
GVHSLYKQLV NSGHALGAKR WVATLDRQCE RLASAMATNI PNTDVGVITS QEGRKSMLKL  540
AERMVISFCA GVSASTAHTW TTLSGTGADD VRVMTRKSID DPGRPPGIVL SAATSFWLPV  600
QPNRVFDFLR DENSRSEWDI LSNGGVVQEM AHIANGRDTG NCVSLLRVNS ANSSQSNMLI  660
LQESCTDSAG SFVIYAPVDI VAMNVVLNGG DPDYVALLPS GFAILPDGSA MQGGNDQQGV  720
GSGGGSLLTV AFQILVDSVP TAKLSLGSVA TVNNLIACTV ERIRASLSCE SA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01715.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051064.10.0PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1
RefseqXP_010051072.10.0PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1
RefseqXP_018730803.10.0PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1
RefseqXP_018730804.10.0PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A059DGQ50.0A0A059DGQ5_EUCGR; Uncharacterized protein
STRINGXP_010051064.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2