PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01766.1.p
Common NameEUGRSUZ_A01766, LOC104456659
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 240aa    MW: 27381.6 Da    PI: 7.3384
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01766.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g WT+eEd++l  +v ++G  +W++ +++ g+ R++k+c++rw +yl
  Eucgr.A01766.1.p 14 KGTWTPEEDKKLRAYVSRYGYWNWRKLPKYAGLSRCGKSCRLRWMNYL 61
                      799*******************************************97 PP
2Myb_DNA-binding51.22.8e-1667111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+ T+eE++ ++++  +lG++ W++Ia++++ gRt++++k++w++ 
  Eucgr.A01766.1.p  67 RGNYTKEEEDTIIRLQGLLGNK-WSAIASHLP-GRTDNEVKNHWHTN 111
                       899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.025961IPR017930Myb domain
SuperFamilySSF466891.47E-3011108IPR009057Homeodomain-like
SMARTSM007174.1E-121363IPR001005SANT/Myb domain
PfamPF002493.6E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-241568IPR009057Homeodomain-like
CDDcd001674.79E-101661No hitNo description
PROSITE profilePS5129424.81962116IPR017930Myb domain
SMARTSM007176.8E-1666114IPR001005SANT/Myb domain
PfamPF002497.3E-1567111IPR001005SANT/Myb domain
CDDcd001671.03E-1069112No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2469116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MARTPGRDKN GMKKGTWTPE EDKKLRAYVS RYGYWNWRKL PKYAGLSRCG KSCRLRWMNY  60
LRPDIKRGNY TKEEEDTIIR LQGLLGNKWS AIASHLPGRT DNEVKNHWHT NLRKRLSQNT  120
SLTSPQEATI TENRSCDLEV GPKNMSETSP NNIFDFPINC PMPPQIVEGS ASLHLSSSSR  180
ETSLSRCIEA VDFSNTECEA SCDTYIAESS GSFWTEPFIT DNNIESWLSL DESSLDFFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01766.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069815.11e-179PREDICTED: myb-related protein Myb4 isoform X2
TrEMBLA0A059DFF51e-178A0A059DFF5_EUCGR; Uncharacterized protein
STRINGXP_010069815.11e-179(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.15e-57myb domain protein 107