PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01767.1.p
Common NameEUGRSUZ_A01767, LOC104440195
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 243aa    MW: 27746.8 Da    PI: 6.2523
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01767.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g WT+eEd +l+ +v ++G  +W+  +++ g+ R++k+c++rw +yl
  Eucgr.A01767.1.p 14 KGTWTPEEDRKLKAYVSKYGFWNWRQLPKYAGLSRCGKSCRLRWMNYL 61
                      799*******************************************97 PP
2Myb_DNA-binding49.78.3e-1667111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+ T+eE++ +v++  +lG++ W++Ia+ ++ gRt++++k++w++ 
  Eucgr.A01767.1.p  67 RGNYTKEEEDTIVRLQGLLGNK-WSAIASQLP-GRTDNEVKNHWHTN 111
                       899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.713965IPR017930Myb domain
SuperFamilySSF466892.22E-3011108IPR009057Homeodomain-like
SMARTSM007174.9E-141363IPR001005SANT/Myb domain
PfamPF002494.5E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-241568IPR009057Homeodomain-like
CDDcd001671.37E-101661No hitNo description
SMARTSM007175.4E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129419.37666116IPR017930Myb domain
PfamPF002494.3E-1467111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2469117IPR009057Homeodomain-like
CDDcd001679.30E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MARTPGRDKN GMKKGTWTPE EDRKLKAYVS KYGFWNWRQL PKYAGLSRCG KSCRLRWMNY  60
LRPDIKRGNY TKEEEDTIVR LQGLLGNKWS AIASQLPGRT DNEVKNHWHT NLKKRLNQNT  120
QPSSTTSPQE ATITENHSWD HEAIPNNISD TSPNNILDLP MDGPMTAQIV EGFASLHSSS  180
SSRETSLSLC METVDFSNTE YEASLDTYIA ESSGSFWTEP FITDNNIESW LLLDERSHDV  240
FY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27121175109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01767.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051469.10.0PREDICTED: myb-related protein Myb4 isoform X1
SwissprotQ7XBH46e-58MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A059DGA20.0A0A059DGA2_EUCGR; Uncharacterized protein
STRINGXP_010051469.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.18e-58myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]