PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01956.1.p
Common NameEUGRSUZ_A01956
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 195aa    MW: 22500.1 Da    PI: 4.8228
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01956.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3345.3e-111031761087
                       HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       +l+s+ l++p++ + ++++k   ++ + + d++gr+W+ +++++  s+ +++t GW+  ++  +Lk +D ++ +l ++
  Eucgr.A01956.1.p 103 ALRSSYLYVPRSVLINYELK--LPQAILFHDPTGRTWRGTVKVWTDSR-TWIT-GWEALCRHTNLKKNDWCICELLEE 176
                       678889***********999..7779***************9999985.5788.******************997764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-1890190IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.7E-1691190IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.694192IPR003340B3 DNA binding domain
CDDcd100176.82E-1095189No hitNo description
SMARTSM010196.6E-497192IPR003340B3 DNA binding domain
PfamPF023623.1E-8103176IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MVFSYQSPGV FRIVLYGHSA CEKKRVRPPW EVGEGSEVQE YHSDDDDDED YNEEEEEEED  60
EGRSKRSKKE GNVEERKAAN EDPIDVKRYI DLKNPYFVTV IQALRSSYLY VPRSVLINYE  120
LKLPQAILFH DPTGRTWRGT VKVWTDSRTW ITGWEALCRH TNLKKNDWCI CELLEENGVA  180
GCIIKVHIIG GNST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01956.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018724383.11e-143PREDICTED: B3 domain-containing protein REM20-like
TrEMBLA0A059DGI91e-142A0A059DGI9_EUCGR; Uncharacterized protein
STRINGXP_010030660.11e-102(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60140.14e-12B3 family protein