PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01990.1.p
Common NameEUGRSUZ_A01990
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 242aa    MW: 27297.5 Da    PI: 8.564
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01990.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.43.4e-34118175259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK vk+s fprsYYrCts+gC+vkk+vers +dp++v++tYeg+Hnh+
  Eucgr.A01990.1.p 118 EDGYRWRKYGQKAVKNSAFPRSYYRCTSQGCMVKKRVERSFQDPSIVVTTYEGQHNHH 175
                       8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-34102177IPR003657WRKY domain
SuperFamilySSF1182901.02E-29110177IPR003657WRKY domain
PROSITE profilePS5081131.927112177IPR003657WRKY domain
SMARTSM007745.9E-41117176IPR003657WRKY domain
PfamPF031067.8E-27118175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDYNTLSRAF DMSCCSSSEV ISTDDSTKGA SILSKNNNQS TPKNSSSALS SSSEEMATVG  60
SEDKDKGKII QDEQSTGCHE DHGREEKSKN GDKSKKKEKR PRQPRFAFLT KSEIDNLEDG  120
YRWRKYGQKA VKNSAFPRSY YRCTSQGCMV KKRVERSFQD PSIVVTTYEG QHNHHSPATL  180
RASNFAGMLM PPNLRSTCLM EPPYFQQELL AQLLQMENNR PDDPMSKLYQ NLDPGLQFRL  240
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-271101781078Probable WRKY transcription factor 4
2lex_A5e-271101781078Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01990.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053561.10.0PREDICTED: probable WRKY transcription factor 71
TrEMBLA0A059DGX60.0A0A059DGX6_EUCGR; Uncharacterized protein
STRINGXP_010053561.11e-180(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15242693
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-44WRKY DNA-binding protein 71