PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02028.2.p
Common NameEUGRSUZ_A02028
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 312aa    MW: 35460.1 Da    PI: 7.0854
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02028.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.71.2e-49281542128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                        pGfrFhPtdeelv +yLk+kve+k+l++ e ik+vdiyk++PwdLp++ + +ekewyfF+ r +ky+++ r+nr+t sg+Wkatg dk++++
  Eucgr.A02028.2.p  28 LPGFRFHPTDEELVAFYLKRKVENKPLSI-ELIKHVDIYKYDPWDLPSN-TVGEKEWYFFCMRGRKYRNSIRPNRVTGSGFWKATGIDKQIHA 118
                       59***************************.89***************43.45889*************************************9 PP

               NAM  95 k..kgel..vglkktLvfykgrapkgektdWvmheyrl 128
                       +     +  +glkk+Lv+y g+a kg+ktdW+mhe+rl
  Eucgr.A02028.2.p 119 AkeP--HdcIGLKKSLVYYCGSAGKGTKTDWMMHEFRL 154
                       7433..255***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.74327186IPR003441NAC domain
SuperFamilySSF1019413.27E-5328185IPR003441NAC domain
PfamPF023656.0E-2629154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEIMQKKSIS ECSGERIMED EDGGGTALPG FRFHPTDEEL VAFYLKRKVE NKPLSIELIK  60
HVDIYKYDPW DLPSNTVGEK EWYFFCMRGR KYRNSIRPNR VTGSGFWKAT GIDKQIHAAK  120
EPHDCIGLKK SLVYYCGSAG KGTKTDWMMH EFRLPPSGKT AHDSLPSDKS TAQEAEVWTL  180
CRIFKRIPSH RKYTPNLKEH ITTLKQNPTD SSSNTSSFET ESAEQYVSFG DSAVVAHNEM  240
KPVILDRFDD RNYLLFAQLN SISQAPLAAP GYSGLWNLHG EDLLMHGNCW DELRSVVERV  300
AINPCQAFDQ R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-502919219171NO APICAL MERISTEM PROTEIN
1ut4_B2e-502919219171NO APICAL MERISTEM PROTEIN
1ut7_A2e-502919219171NO APICAL MERISTEM PROTEIN
1ut7_B2e-502919219171NO APICAL MERISTEM PROTEIN
3swm_A2e-502919222174NAC domain-containing protein 19
3swm_B2e-502919222174NAC domain-containing protein 19
3swm_C2e-502919222174NAC domain-containing protein 19
3swm_D2e-502919222174NAC domain-containing protein 19
3swp_A2e-502919222174NAC domain-containing protein 19
3swp_B2e-502919222174NAC domain-containing protein 19
3swp_C2e-502919222174NAC domain-containing protein 19
3swp_D2e-502919222174NAC domain-containing protein 19
4dul_A2e-502919219171NAC domain-containing protein 19
4dul_B2e-502919219171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02028.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053974.10.0PREDICTED: transcription factor JUNGBRUNNEN 1
SwissprotQ9SK551e-92NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A059DHP70.0A0A059DHP7_EUCGR; Uncharacterized protein
STRINGXP_010053974.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-90NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]