PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02043.1.p
Common NameEUGRSUZ_A02043
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 569aa    MW: 62335.1 Da    PI: 7.8324
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.49.3e-17376422455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Eucgr.A02043.1.p 376 VHNLSERRRRDRINKKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 422
                       6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-20370434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.222372421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.41E-17375426No hitNo description
PfamPF000103.1E-14376422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-20376430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-18378427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MRPGSENLKI RLFHLITLLG TSQRLALKLF VRCAAMNPCL PDWNFEYDLP LTNQKKNIGS  60
DQELVELLWQ NGQVVMHSQN HRKPSSNQHE SSQLPKQDQP IMKGSGSYGN SSNLIQDDET  120
VSWIHYPVED SFEREFCSNF FDELPVPHPM EIDKAVRQVE AEKIVKSASF NDAHNTSNQQ  180
STVKRALVPE ISGNQMPPPR AQFAKSAQQN NVTGNLGKVV NFSQFASPVK GDPRPSSLHF  240
GGDARECSVM TVGSSHCGSN QIVNDPDFSR ASSNAAGTAG FSAGTFKEDV HKNVVSQSEG  300
RKTETLEPTV TSSSGGSDSS FGGTLKESAG ASSHKRKGRD NEESECQSEA AEPEVAGGKK  360
PATRSGSTRR SRAAEVHNLS ERRRRDRINK KMKALQELIP HCNKTDKASM LDEAIEYLKS  420
LQLQLQVMWM GGGMAPMMFP GVQHYMSSMG MTMCPPPMPT VSNNLHLPQV PVVDQSIPMA  480
PNPNQSAICH TPVLNPMNFQ NQMQSPSFPE QFARYMGMHH MQATSQPMNM FKFGPQTVQQ  540
IQTNPLPGSI SGQYSGGATN DALSGKMG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1380385ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02043.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054152.10.0PREDICTED: transcription factor PIF5
TrEMBLA0A059DGA50.0A0A059DGA5_EUCGR; Uncharacterized protein
STRINGXP_010054152.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34682561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.23e-32phytochrome interacting factor 4