PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02065.2.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARF
Protein Properties Length: 869aa    MW: 96413.2 Da    PI: 6.4471
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02065.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.17.8e-24132233199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +
  Eucgr.A02065.2.p 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--W 220
                       99*****************************8544444..48************************************************..8 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +++ +l+++++r+
  Eucgr.A02065.2.p 221 NEKNQLLLGIRRA 233
                       899999****997 PP
2Auxin_resp110.12.3e-36258339183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+t+s F+++YnP+  +seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  Eucgr.A02065.2.p 258 AAHAAATNSRFTIFYNPS--PSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 339
                       79***************7..7**************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.88E-49117261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-42125247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-21131232No hitNo description
PROSITE profilePS5086312.548132234IPR003340B3 DNA binding domain
SMARTSM010191.8E-24132234IPR003340B3 DNA binding domain
PfamPF023624.9E-22132233IPR003340B3 DNA binding domain
PfamPF065071.5E-31258339IPR010525Auxin response factor
PfamPF023091.9E-7755852IPR033389AUX/IAA domain
SuperFamilySSF542773.47E-8756838No hitNo description
PROSITE profilePS5174526.283764849IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MRLSSSGFNH QSPEASNAGE KKCLNSELWH ACAGPLVSLP PVGSRVVYFP QGHSEQVAAS  60
TNKEVDAHIP NYPNLSPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLSPQE QKDLYLLPAE  120
LGTPSKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDYSQQPPAQ ELIARDLHDN  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRANRPQTVM  240
PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPSPSEFV IPLAKYVKAV YHTRVSVGMR  300
FRMLFETEES SVRRYMGTIT GISDLDPVRW QNSHWRSVKV GWDESTAGER QPRVSLWEIE  360
PLTTFPMYPS PFPLRLKRPW PSGLPSFHAL RDGDMSISSS LMWLQGVGDQ GVQSLNFQGF  420
GMTPWLQPRY DTSMAALQTD VYQAMASAAL QDMRAVDPSK CASQSLLPLQ QSQNVPMGQA  480
SIIQRQMLQQ SQSQNSLLQG FQENQATAQG QVLQHPSYND QRQQQQQHQQ QPQQSQQFNH  540
TSLQQQMPNI ITTLPQYGSI GQSQSSSLPA ISQSQQNIFS DGMENPIVAS DVSPMQSILG  600
SISRDGSSQL LSVNGSDSMI SSSLLKKQNS VEPHLLSEAA HCILPQVEQL ATTHTNVSEF  660
ANYLPPFPGR EYSAYPGATD PQSSLLFGVN IDSTSLMMQN GMQHLRNIGS EHDSLSVPFG  720
TSNFASVAGT EFPHNSDMAT SSCVDESGFL QSSENVDQVN PPTRTFVKVH KSGTFGRSLD  780
ISKFSSYDEL RSELARMFGL EGQLEDPQRS GWQLVFVDRE NDILLLGDDP WQEFVNNVWY  840
IKILSPHEVK QLGKQGINPA NSVPRQAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1602036047388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02065.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054260.20.0PREDICTED: LOW QUALITY PROTEIN: auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLW9S1H80.0W9S1H8_9ROSA; Multifunctional fusion protein
STRINGXP_010054260.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]