PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02065.3.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARF
Protein Properties Length: 866aa    MW: 96090 Da    PI: 6.4115
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02065.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.8e-24127228199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +
  Eucgr.A02065.3.p 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--W 215
                       99*****************************8544444..48************************************************..8 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +++ +l+++++r+
  Eucgr.A02065.3.p 216 NEKNQLLLGIRRA 228
                       899999****997 PP
2Auxin_resp121.18.2e-40253336183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  Eucgr.A02065.3.p 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 336
                       79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.88E-49112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-21126227No hitNo description
PfamPF023624.9E-22127228IPR003340B3 DNA binding domain
SMARTSM010191.8E-24127229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548127229IPR003340B3 DNA binding domain
PfamPF065071.7E-34253336IPR010525Auxin response factor
PfamPF023091.9E-7752849IPR033389AUX/IAA domain
SuperFamilySSF542773.4E-8753835No hitNo description
PROSITE profilePS5174526.283761846IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MSSEFCPLLA SNAGEKKCLN SELWHACAGP LVSLPPVGSR VVYFPQGHSE QVAASTNKEV  60
DAHIPNYPNL SPQLICQLHN VTMHADVETD EVYAQMTLQP LSPQEQKDLY LLPAELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPSG LPSFHALRDG DMSISSSLMW LQGVGDQGVQ SLNFQGFGMT  420
PWLQPRYDTS MAALQTDVYQ AMASAALQDM RAVDPSKCAS QSLLPLQQSQ NVPMGQASII  480
QRQMLQQSQS QNSLLQGFQE NQATAQGQVL QHPSYNDQRQ QQQQHQQQPQ QSQQFNHTSL  540
QQQMPNIITT LPQYGSIGQS QSSSLPAISQ SQQNIFSDGM ENPIVASDVS PMQSILGSIS  600
RDGSSQLLSV NGSDSMISSS LLKKQNSVEP HLLSEAAHCI LPQVEQLATT HTNVSEFANY  660
LPPFPGREYS AYPGATDPQS SLLFGVNIDS TSLMMQNGMQ HLRNIGSEHD SLSVPFGTSN  720
FASVAGTEFP HNSDMATSSC VDESGFLQSS ENVDQVNPPT RTFVKVHKSG TFGRSLDISK  780
FSSYDELRSE LARMFGLEGQ LEDPQRSGWQ LVFVDRENDI LLLGDDPWQE FVNNVWYIKI  840
LSPHEVKQLG KQGINPANSV PRQAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-164835739388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02065.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054260.20.0PREDICTED: LOW QUALITY PROTEIN: auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLW9S1H80.0W9S1H8_9ROSA; Multifunctional fusion protein
STRINGXP_010054260.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]