PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.A02082.1.p

Common Name

EUGRSUZ_A02082, LOC104442716

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

G2-like

Protein Properties

Length: 378aa MW: 41747.6 Da PI: 7.3337

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.A02082.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.1	4e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt++LH+rFveav+qLGG++kAtPk+il++m+++gLtl+h+kSHLQkYRl Eucgr.A02082.1.p 46 KPRLKWTTDLHKRFVEAVNQLGGADKATPKSILKAMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.436	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-31	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.94E-17	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.0E-24	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	9.2E-10	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-20	143	189	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MHNHSLYGGK NFHPSSRMSI LSERHLLLQA ANGPGDSGLI LSTDAKPRLK WTTDLHKRFV 60 EAVNQLGGAD KATPKSILKA MGIPGLTLYH LKSHLQKYRL SKNLHGQATN GTNRAVAEVK 120 VSEANGPHLN NSSIGIQVNK NLHISEAFQV QIEVQRRLHE QMEAQRHMQL HIEAQGKYLQ 180 AVLEKAQETL GRHDSGSVGL EAAKYQLSEL VSKVSADSLS STFPDVVDIH LHQMQMNQNT 240 DGSLDSCLTC ERPQKDREED VDGSRSRDHH PNPFLLPSDI ADDRRRGQTV PEDAEERVKR 300 AICDLSTTCG YRSSSEGTNG RVDEKIKLAS PRRTSDDETG SIEAGREGLS LGYGSSRLRS 360 KLDLNVRDED LNGFGWS*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MHNHSLYGGK NFHPSSRMSI LSERHLLLQA ANGPGDSGLI LSTDAKPRLK WTTDLHKRFV  60
EAVNQLGGAD KATPKSILKA MGIPGLTLYH LKSHLQKYRL SKNLHGQATN GTNRAVAEVK  120
VSEANGPHLN NSSIGIQVNK NLHISEAFQV QIEVQRRLHE QMEAQRHMQL HIEAQGKYLQ  180
AVLEKAQETL GRHDSGSVGL EAAKYQLSEL VSKVSADSLS STFPDVVDIH LHQMQMNQNT  240
DGSLDSCLTC ERPQKDREED VDGSRSRDHH PNPFLLPSDI ADDRRRGQTV PEDAEERVKR  300
AICDLSTTCG YRSSSEGTNG RVDEKIKLAS PRRTSDDETG SIEAGREGLS LGYGSSRLRS  360
KLDLNVRDED LNGFGWS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-19	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-19	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-19	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-19	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.A02082.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010054431.1	0.0	PREDICTED: myb-related protein 1 isoform X2
Swissprot	Q9SQQ9	1e-104	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A059DGG5	0.0	A0A059DGG5_EUCGR; Uncharacterized protein
STRING	XP_010054416.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3878	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-106	G2-like family protein

Link Out ? help Back to Top
Phytozome	Eucgr.A02082.1.p
Entrez Gene	104442716

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]