PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02109.1.p
Common NameEUGRSUZ_A02109, LOC104442998
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 296aa    MW: 32186.5 Da    PI: 5.0408
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02109.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-183887255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y GVr+++ +grWvAeI+d +   ++ r +lg++ taeeAa+a+++a+  l+g
  Eucgr.A02109.1.p 38 KYVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTYETAEEAARAYDQAACLLRG 87
                      8********.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-133887IPR001471AP2/ERF domain
SMARTSM003802.1E-3738101IPR001471AP2/ERF domain
PROSITE profilePS5103220.2573895IPR001471AP2/ERF domain
CDDcd000181.11E-313897No hitNo description
Gene3DG3DSA:3.30.730.102.6E-283896IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-193896IPR016177DNA-binding domain
PRINTSPR003677.0E-83950IPR001471AP2/ERF domain
PRINTSPR003677.0E-86177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEIHFQQQQP GGEADIPVTK LGNRFKPRSR GHGNVSNKYV GVRQRPSGRW VAEIKDTTQK  60
IRMWLGTYET AEEAARAYDQ AACLLRGSNT RTNFATHAVS SDSALASRIR NLLNNKKGGT  120
NQPSFDASLS STTGTATTGT STTAKTTTSA THSCSSTSCS SNSCTDSGST LSADDKINSE  180
AIQVFSEDVY KPDLSHCGDE LELISSKYNL SWAPEHGFDR FSYAQEVMEL PNSIKAGPAD  240
ESDEMGELSP FDRMQVERQI SASLYAMNGL QEYMETVHDP SEGLWDLPPL CSLLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-152994571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs) (PubMed:17449807, PubMed:17827349). Binds to the GCC-box (NF-responsive box) of ENOD11 promoter. Acts as transcriptional activator of NF-responsive box-containing target gene promoters in root hairs (PubMed:17827349). Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation and maintenance, and nodule development. Necessary for NF-induced gene expression and spontaneous nodulation activated by CCAMK. Functions downstream of CCAMK to activate nodulation gene expression (PubMed:17449807). Involved in early stages of root nodule development. Functions redundantly with ERN2. Is essential with ERN2 for the initiation of root hair infection, and nodule organogenesis and development. Required for accurate expression of the NF signaling genes ENOD11 and ENOD12 (PubMed:23077241, PubMed:27208242). {ECO:0000269|PubMed:17449807, ECO:0000269|PubMed:17827349, ECO:0000269|PubMed:23077241, ECO:0000269|PubMed:27208242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02109.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots from 1 to 21 day after inoculation with Sinorhizobium meliloti (PubMed:17449807). Induced by Nod factors in root hairs (PubMed:17827349). {ECO:0000269|PubMed:17449807, ECO:0000269|PubMed:17827349}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054671.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11
SwissprotA2Q5W15e-88ERN1_MEDTR; Ethylene-responsive transcription factor ERN1
TrEMBLA0A059DH360.0A0A059DH36_EUCGR; Uncharacterized protein
STRINGXP_010054671.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16007712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-26related to AP2 11
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  3. Cerri MR, et al.
    The Symbiosis-Related ERN Transcription Factors Act in Concert to Coordinate Rhizobial Host Root Infection.
    Plant Physiol., 2016. 171(2): p. 1037-54
    [PMID:27208242]