PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02250.1.p
Common NameEUGRSUZ_A02250
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 242aa    MW: 26903.7 Da    PI: 7.308
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH491.1e-1548100155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++ +hn+ Er RR++iNs ++ Lr+llP+a   + +Kls  +++ ++ +YI +Lq
  Eucgr.A02250.1.p  48 KKLNHNACERDRRKKINSLYSALRSLLPSA--DQTEKLSIPATVSQVLKYIPELQ 100
                       6789*************************5..599*****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.9294799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.10E-1348104No hitNo description
SuperFamilySSF474591.83E-1648118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-1348100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-1448119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-1153105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MRRDAHPFSS PPPLHFAFLS SPSPHAEVVL DHLNIPAAAT NGEATMVKKL NHNACERDRR  60
KKINSLYSAL RSLLPSADQT EKLSIPATVS QVLKYIPELQ QQVQILARER EELLSRINAT  120
QGIDDCTHQE ISKGKGALSN PMPSISTNCL SESEVAIQIC TTKVMTQNTV DFSEILLNLD  180
HHGFPLISAS TFESFGGTRT TFYNLHVQVE RSRGMECEAL KEKLLALYDQ KGREVKFPIQ  240
H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010023785.11e-180PREDICTED: transcription factor bHLH101
TrEMBLA0A059DH161e-179A0A059DH16_EUCGR; Uncharacterized protein
STRINGXP_010023785.11e-179(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-40bHLH family protein