PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02338.1.p
Common NameEUGRSUZ_A02338, LOC104444867
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 256aa    MW: 29214.7 Da    PI: 8.3152
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02338.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.23.1e-34271182102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+y ++ed++++++isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+k+ +++         weF ++ F+kg++ell
  Eucgr.A02338.1.p  27 FLLKTYMLVEDPATDDVISWNADGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKIATSR---------WEFCNDMFRKGERELL 110
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  Eucgr.A02338.1.p 111 CEIRRRKA 118
                       *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-3620111IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.63E-3323116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5223116IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.0E-3127116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-182750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-187890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEANADFISE KKGLLLEYVR KSTPPPFLLK TYMLVEDPAT DDVISWNADG TAFVVWQPAE  60
FARDLLPTLF KHSNFSSFVR QLNTYGFRKI ATSRWEFCND MFRKGERELL CEIRRRKAWA  120
NKPRSNPSTQ AHQDNNHNHS SDEDQRSSST SSSSEYSNLI HENKRLKKEN GALSSELTGM  180
KYKCKELLEL VAKYTRHEDG DGEEEEEEKG NNNGGEGLKL FGVRLEVKGD QRGERKRKGA  240
RIRESASILL SQSCK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-202211615120Heat shock factor protein 1
5d5u_B3e-202211624129Heat shock factor protein 1
5d5v_B3e-202211624129Heat shock factor protein 1
5d5v_D3e-202211624129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02338.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056951.10.0PREDICTED: heat stress transcription factor B-3
SwissprotO222301e-72HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A059DIB70.0A0A059DIB7_EUCGR; Uncharacterized protein
STRINGXP_010056944.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.19e-64heat shock transcription factor B3