PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02341.3.p
Common NameEUGRSUZ_A02341, LOC104444905
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 424aa    MW: 46630.8 Da    PI: 8.8939
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02341.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-1772131155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Eucgr.A02341.3.p  72 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 131
                       57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.66E-1772140IPR016177DNA-binding domain
PfamPF008476.4E-1372131IPR001471AP2/ERF domain
SMARTSM003802.6E-2573145IPR001471AP2/ERF domain
PROSITE profilePS5103220.12673139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1573140IPR001471AP2/ERF domain
PRINTSPR003675.2E-57485IPR001471AP2/ERF domain
PRINTSPR003675.2E-5121141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MASSSSEPGL KSESGGGGGG GGGGGGEASE AAGGDQQLLL YRGLKKAKKE RGCTAKERIS  60
KMPPCAAGKR SSIYRGVTRH RWTGRYEAHL WDKSTWNQNQ NKKGKQVYLG AYDDEEAAAR  120
AYDLAALKYW GPGTLINFPV KDYARDLEEM QNVSREDYLV SLRRKSSGFS RGVSKYRGLS  180
SRWESSFSRI GGAEYFNSIY GEDPAIESDF GGSFCIDRKI DLTGYIKWWG QNKTRQLDLA  240
TKSSEEVKHC SSDDINAELK TSEWEATEPY QMPRLGVPRD GRRHKGSTLS ALGVLSQSAA  300
YKSLQEKALK KQEKDHDNDD ENKNTINRMD YGQPVEKSRS HEASEKQGVT VGMSGTPPPQ  360
RNLYPLTSFL NAPLLTNYSS IDPMADPVLW SSLVPGLPAG LSRTAEVPKT ETSSTYTFVQ  420
PQE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02341.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057009.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X4
SwissprotQ8GWK21e-155AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A059DIS20.0A0A059DIS2_EUCGR; Uncharacterized protein
STRINGXP_010056990.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-146AP2 family protein