PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.A02413.2.p

Common Name

EUGRSUZ_A02413

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 351aa MW: 38150.6 Da PI: 5.474

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.A02413.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.7	7.7e-07	191	238	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er R++iN ++ L+el+P + sk a++L + +++++sLq Eucgr.A02413.2.p 191 SHSLAERVSREKINARMKLLQELVPGC----SKISGTASVLDEIINHVQSLQ 238 89**********************9....788999************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-13	185	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.38E-8	185	242	No hit	No description
PROSITE profile	PS50888	14.1	187	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-13	187	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-4	191	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-6	193	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MEPSSLTLAG STDAALESVL TEEIRSLMAP PPESTSSFTA LLELPRTRAI ELLHSPEAPN 60 SPGVAVPGGP AGTPLRRLGG DGGGGFALAV GSDLAARYPA LFGEKNDSVE TSSQKVKSEP 120 LTESDSNPNS SPQPLVSDPT VENKGQRPTK RKDREKKAKA SAKKSKNESS EDAEELPYVH 180 VRARRGQATD SHSLAERVSR EKINARMKLL QELVPGCSKI SGTASVLDEI INHVQSLQRQ 240 VELLSMRLAA ANPRVDFNMD NNFAENMSLV DSNFPSMVMP FMWPEVQVNE SRQPYHQQWQ 300 FNSLPQPVWG REQDNHNFIT PENSLLSYDS PANSVSLHSR ATENGAMKVD *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MEPSSLTLAG STDAALESVL TEEIRSLMAP PPESTSSFTA LLELPRTRAI ELLHSPEAPN  60
SPGVAVPGGP AGTPLRRLGG DGGGGFALAV GSDLAARYPA LFGEKNDSVE TSSQKVKSEP  120
LTESDSNPNS SPQPLVSDPT VENKGQRPTK RKDREKKAKA SAKKSKNESS EDAEELPYVH  180
VRARRGQATD SHSLAERVSR EKINARMKLL QELVPGCSKI SGTASVLDEI INHVQSLQRQ  240
VELLSMRLAA ANPRVDFNMD NNFAENMSLV DSNFPSMVMP FMWPEVQVNE SRQPYHQQWQ  300
FNSLPQPVWG REQDNHNFIT PENSLLSYDS PANSVSLHSR ATENGAMKVD *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.A02413.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010057670.1	0.0	PREDICTED: transcription factor bHLH48 isoform X2
Swissprot	Q8VZ02	4e-73	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A059DIZ3	0.0	A0A059DIZ3_EUCGR; Uncharacterized protein
STRING	XP_010057666.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	3e-72	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.A02413.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]