PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02417.1.p
Common NameEUGRSUZ_A02417, LOC104445532
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 391aa    MW: 42074.6 Da    PI: 9.403
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02417.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-13319364655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  Eucgr.A02417.1.p 319 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 364
                       689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148313363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-16316378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.03E-13317366No hitNo description
Gene3DG3DSA:4.10.280.102.4E-14318375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-10319364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11319369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDSSNHQSYN QSQPSSYGLL RFRTAPTSVL ENFAEGGASK AGLSEGYEAD KFSSRFLSYG  60
GAGRESGSPS LQAFDEKSPP STVAEAAAAA AVGSYASSPR GGYALPPHYP RQSSAMDGSY  120
GVLSSMAADR HPQVKPGDSS IARQASSPPG LFSDLSAQNG FAAMRGTTNY RVGNVVDGES  180
SPSRNKLNGQ MSFSSGMLSH ISELGSESFG AQNSDDAKIG IGSGNSRFHG SGYLFNSWSD  240
SSNFSQNFIG LRRDEGNGLK KFSSDQNGSP GNQVHLLSHH MSLPKTSSEM ATVEKFLQFQ  300
DSVPCKIRAK RGCATHPRSI AERVRRTRIS ERMRKLQELV PNMDKQTNTA DMLDLAVEYI  360
KDLQKQFKIL SENRANCKCL SMQKLSNQIV *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02417.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057742.10.0PREDICTED: transcription factor bHLH130 isoform X2
TrEMBLA0A059DI710.0A0A059DI71_EUCGR; Uncharacterized protein
STRINGXP_010057736.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-105bHLH family protein