PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02441.1.p
Common NameEUGRSUZ_A02441, LOC104445761
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 391aa    MW: 41273.7 Da    PI: 9.001
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02441.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP136.21e-4292167176
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                       +CqvegC++dls+ak y++rhkvC +hsk+++v+v+g+eqrfCqqCsrfh+l+efD++krsCrrrLa+hnerrrk+
  Eucgr.A02441.1.p  92 RCQVEGCRVDLSDAKAYYSRHKVCGMHSKSATVIVAGIEQRFCQQCSRFHQLTEFDQGKRSCRRRLAGHNERRRKP 167
                       6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.6E-3586154IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.13790167IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-4091171IPR004333Transcription factor, SBP-box
PfamPF031103.3E-3293166IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDVGSGSWTT ESGSSSPPPL ESLNGLKFGQ KIYFQNNNSS NNAAAPKHGS GSGSGSSSAA  60
APAPGSGTPP KKVRASAGGG GCGAIQGGQP PRCQVEGCRV DLSDAKAYYS RHKVCGMHSK  120
SATVIVAGIE QRFCQQCSRF HQLTEFDQGK RSCRRRLAGH NERRRKPPPG SLLSSRYGRL  180
QSSIFENTTR VGSFLMDFTA YPKHAWSAPR FSERTTPGDL VPGPGKVYPH PWQSSPENPP  240
SDLFLQCSSG GTTAFPAPGI PPGECFTGVA DSSCALSLLS NQPWGSTNQP SPLGTNHMVH  300
PQGSTLAQSM PPHSSAIHFT GPGSAWAFKG NDAGGSSIGL AADLGLGQFS QPLNNQFSGD  360
MELSQHSRRQ FMELDPSRAY DSTHQTHWSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-31931661184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02441.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4503900.0HQ450390.1 Eucalyptus globulus SPL9-like protein (SPL9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057993.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A059DIL40.0A0A059DIL4_EUCGR; Uncharacterized protein
STRINGXP_010057993.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21442775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.15e-70squamosa promoter binding protein-like 9