PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02462.1.p
Common NameEUGRSUZ_A02462, LOC104445990
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 327aa    MW: 35949.3 Da    PI: 8.2375
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02462.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45.2e-18166220256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ +++keq   Lee F+++++++ +e+  LA++l+L  rqV vWFqNrRa+ k
  Eucgr.A02462.1.p 166 RKKLRLSKEQSAFLEESFKEHHTLNPKEKLALARQLNLRPRQVEVWFQNRRARTK 220
                       788899***********************************************98 PP
2HD-ZIP_I/II125.52.3e-40166256192
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       +kk+rlskeq+++LEesF+e+++L+p++K +lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  Eucgr.A02462.1.p 166 RKKLRLSKEQSAFLEESFKEHHTLNPKEKLALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTEENKRLHKELQELR-ALK 256
                       69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-17152216IPR009057Homeodomain-like
SuperFamilySSF466898.98E-19158223IPR009057Homeodomain-like
PROSITE profilePS5007116.876162222IPR001356Homeobox domain
SMARTSM003891.3E-15164226IPR001356Homeobox domain
CDDcd000867.96E-17166223No hitNo description
PfamPF000461.7E-15166220IPR001356Homeobox domain
PROSITE patternPS000270197220IPR017970Homeobox, conserved site
SMARTSM003405.5E-20222265IPR003106Leucine zipper, homeobox-associated
PfamPF021832.9E-10222256IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MELGLSLGDA PFLEKEDLGF HLGLGSSFCG RPKEARDHGC GDVEDKSKRP RDAVALQLHL  60
FPSRSPSLLP QLNDNNGDSS DGLAEGKWLP SRLLATAAAA KTELVDAGAE RLSSPNSGTS  120
SFHQLEFRSG SGGRSKTVDA LSLEGDNERA CSKGSDEYDE DNGLARKKLR LSKEQSAFLE  180
ESFKEHHTLN PKEKLALARQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEH LKRCCERLTE  240
ENKRLHKELQ ELRALKSSHH YSFMKHPVPA TTLSMCPSCE RISTSTAAAT NMNKMPAPSS  300
SLTSANPRTA LIHQPLPNNT QAQAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214222RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02462.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058214.10.0PREDICTED: homeobox-leucine zipper protein HOX11
SwissprotP466652e-73HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A059DIP30.0A0A059DIP3_EUCGR; Uncharacterized protein
STRINGXP_010058214.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-75homeobox from Arabidopsis thaliana